What is the purpose of a Helicobacter pylori (H. pylori) stool test?

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Last updated: May 12, 2025View editorial policy

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From the Guidelines

The H. pylori stool test is a reliable and preferred non-invasive method for detecting Helicobacter pylori infection, especially when used in conjunction with other diagnostic strategies and considering patient preferences and local test availability 1. When performing the H. pylori stool test, it is essential to follow the recommended guidelines to ensure accurate results.

  • The test requires a small stool sample, which should be collected using the provided kit and returned to the laboratory promptly, usually within 24 hours.
  • Patients should avoid taking antibiotics for at least 4 weeks and proton pump inhibitors (PPIs) for 2 weeks before the test to prevent false negative results, as these medications can temporarily reduce the bacterial load in the stomach 1.
  • The test detects H. pylori antigens in the stool sample, and results are typically available within a few days.
  • If the test is positive, treatment usually involves a regimen of two antibiotics, such as amoxicillin and clarithromycin, plus a PPI, like omeprazole, for 7-14 days, which effectively eradicates the bacteria in most cases 1. It is crucial to note that the diagnostic strategy should reflect not only the clinical indication but also the local availability and costs of the different tests, as well as patient preferences 1.
  • Non-invasive tests, such as the urea breath test (UBT) and the stool antigen test, are preferred over invasive methods, like endoscopy, due to their ease of use and lower risk of complications 1.
  • Serologic tests, which detect anti-H. pylori IgG antibodies, are generally not recommended due to their low specificity and sensitivity, and the fact that they remain positive long after the infection has been eradicated 1.

From the Research

H pylori Stool Test

  • The H pylori stool test, also known as the stool antigen test (SAT), is a non-invasive diagnostic method used to detect H pylori infection 2.
  • The test detects the presence of H pylori antigens in the stool, which are produced by the bacteria 2.
  • There are two types of SATs: enzyme immunoassay (EIA) and immunochromatography (ICA) 2.
  • SATs are useful for primary diagnosis and for assessing eradication therapy 2.
  • The accuracy of SATs can be affected by factors such as the quality of the stool sample, temperature, and the interval between sample collection and measurement 2.

Comparison with Other Diagnostic Methods

  • The diagnostic accuracy of SATs has been compared to other non-invasive tests, such as the urea breath test and serology 3.
  • A study found that the urea breath test had higher diagnostic accuracy than SATs and serology 3.
  • However, SATs are still considered a useful diagnostic tool, especially in certain populations such as children and post-gastric surgery patients 2, 4.

Clinical Applications

  • The H pylori stool test can be used to diagnose H pylori infection in symptomatic patients, including those with epigastric pain, heartburn, and nausea or vomiting 4.
  • The test can also be used to monitor the effectiveness of eradication therapy 2.
  • In addition, SATs can be used in epidemiological studies to detect H pylori infection in asymptomatic individuals 5.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Non-invasive diagnostic tests for Helicobacter pylori infection.

The Cochrane database of systematic reviews, 2018

Research

Diagnostic methods for Helicobacter pylori infection: ideals, options, and limitations.

European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology, 2019

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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