Does amoxicillin (amoxicillin) cover Bacteroides fragilis?

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Last updated: May 17, 2025View editorial policy

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From the Guidelines

No, amoxicillin does not effectively cover Bacteroides fragilis. Bacteroides fragilis is an anaerobic gram-negative bacterium that typically produces beta-lactamase enzymes, which can inactivate amoxicillin 1. For infections where B. fragilis is suspected or confirmed, more appropriate antibiotic choices would include metronidazole, amoxicillin-clavulanate (Augmentin), piperacillin-tazobactam, carbapenems (like meropenem or imipenem), or clindamycin.

Key Points to Consider

  • B. fragilis is commonly found in intra-abdominal, pelvic, and anaerobic soft tissue infections, so proper coverage is essential when treating these conditions.
  • The emergence of resistance in B. fragilis group isolates, especially against metronidazole, has important implications in the treatment of surgical infections 1.
  • According to a US national survey, the rates of resistance to clindamycin and moxifloxacin were high for B. fragilis isolates, at 19% and 27%, respectively 1.
  • In contrast, the rates of resistance to carbapenems and beta-lactam–beta-lactamase inhibitor combinations were low 1. If you're dealing with a polymicrobial infection that might include B. fragilis, combination therapy or a broader-spectrum agent would be necessary rather than amoxicillin alone.

Treatment Options

  • Metronidazole: a potent agent against B. fragilis, with only one metronidazole-resistant B. fragilis strain documented in the study 1.
  • Amoxicillin-clavulanate (Augmentin): a beta-lactam antibiotic that resists beta-lactamase degradation.
  • Piperacillin-tazobactam: a beta-lactam antibiotic that inhibits beta-lactamase enzymes.
  • Carbapenems (like meropenem or imipenem): broad-spectrum antibiotics that are effective against B. fragilis.
  • Clindamycin: an antibiotic that is effective against B. fragilis, but with increasing resistance rates 1.

From the FDA Drug Label

Anaerobic Bacteria Bacteroides species, including Bacteroides fragilis (β-lactamase and non-β-lactamase- producing) The combination of amoxicillin and clavulanic acid is effective against Bacteroides fragilis.

  • The FDA drug label for amoxicillin and clavulanate potassium indicates that it has been shown to be active against Bacteroides species, including Bacteroides fragilis 2.
  • This suggests that amoxicillin, when combined with clavulanic acid, is effective against Bacteroides fragilis.

From the Research

Amoxicillin Coverage for Bacteroides Fragilis

  • Amoxicillin alone has limited coverage for Bacteroides fragilis, as most strains are beta-lactamase positive and resistant to amoxicillin 3, 4, 5.
  • The addition of clavulanate to amoxicillin (amoxicillin-clavulanate) enhances its coverage for Bacteroides fragilis, as clavulanate inhibits beta-lactamase production 6, 3, 4.
  • Studies have shown that amoxicillin-clavulanate is effective against Bacteroides fragilis, with MIC90s ranging from 1-16 micrograms/ml 3, 4.
  • Other antibiotics, such as metronidazole, imipenem, and cefoxitin, also have good activity against Bacteroides fragilis 3, 4, 5.

Susceptibility of Bacteroides Fragilis to Amoxicillin

  • The susceptibility of Bacteroides fragilis to amoxicillin varies, with some studies reporting resistance rates of up to 93% 4.
  • The addition of clavulanate to amoxicillin improves its susceptibility profile, with resistance rates decreasing to around 2-11% 3, 4.
  • Beta-lactamase production is a major factor contributing to amoxicillin resistance in Bacteroides fragilis, with most strains being beta-lactamase positive 3, 4, 5.

Clinical Implications

  • Amoxicillin-clavulanate may be a suitable option for the treatment of infections caused by Bacteroides fragilis, particularly in cases where beta-lactamase production is a concern 6, 3, 4.
  • However, the use of amoxicillin-clavulanate should be guided by susceptibility testing and clinical judgment, as resistance rates can vary depending on the population and geographic location 7, 4.

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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