What is the utility of testing the gut in clinical scenarios?

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Last updated: June 15, 2025View editorial policy

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From the Guidelines

Testing the gut in clinical scenarios is crucial for diagnosing and managing various gastrointestinal disorders, and its utility lies in identifying specific pathologies, guiding treatment decisions, and monitoring disease progression, as supported by recent guidelines and studies, including the 2023 AGA clinical practice guideline on the role of biomarkers for the management of ulcerative colitis 1. The primary utility of gut testing includes:

  • Identifying specific pathologies, such as inflammatory bowel disease, celiac disease, and irritable bowel syndrome
  • Guiding treatment decisions, including the use of biomarkers to monitor disease activity and adjust treatment accordingly
  • Monitoring disease progression, including the use of endoscopic procedures and imaging studies to assess the extent of disease and response to treatment Common gut tests include:
  • Stool analysis for infections, such as C. difficile and H. pylori
  • Inflammatory markers, such as calprotectin and lactoferrin
  • Blood in stool, including fecal occult blood test
  • Microbiome analysis
  • Breath tests to diagnose conditions like small intestinal bacterial overgrowth (SIBO) and lactose intolerance
  • Gut permeability tests using substances like lactulose/mannitol to assess intestinal barrier function
  • Endoscopic procedures, such as colonoscopy and upper endoscopy, to allow direct visualization of the GI tract and tissue sampling The 2023 AGA clinical practice guideline on the role of biomarkers for the management of ulcerative colitis 1 suggests that biomarkers, such as fecal calprotectin and CRP, can be used to monitor disease activity and guide treatment decisions. Additionally, the 2024 AGA clinical practice update on the role of intestinal ultrasound in inflammatory bowel disease 1 highlights the utility of intestinal ultrasound in assessing and monitoring IBD activity, providing a noninvasive and radiation-free alternative to endoscopies and biomarkers. It is essential to select testing based on specific clinical presentations and suspected diagnoses to maximize diagnostic yield and cost-effectiveness, as noted in the 2019 AGA technical review on the evaluation of functional diarrhea and diarrhea-predominant irritable bowel syndrome in adults (IBS-D) 1. Overall, the utility of testing the gut in clinical scenarios is significant, and its application can lead to improved patient outcomes, reduced morbidity, and enhanced quality of life, as supported by the latest evidence and guidelines 1.

From the FDA Drug Label

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From the Research

Utility of Gut Testing in Clinical Scenarios

The utility of testing the gut in clinical scenarios is multifaceted, serving several purposes including diagnosis, prognosis, and treatment response monitoring.

  • Diagnosis: Testing the gut can help identify underlying mechanisms of diseases such as irritable bowel syndrome with diarrhea (IBS-D), small intestinal bacterial overgrowth, bile acid malabsorption, food intolerance, and motility disorders 2.
  • Prognosis and Treatment Monitoring: Stool testing can provide valuable diagnostic, prognostic, and treatment response information, especially when assessing inflammatory, watery (osmotic), and malabsorptive conditions 3.

Clinical Applications

Gut testing has various clinical applications:

  • Chronic Diarrhea and IBS-D: Evaluation and management of chronic diarrhea can be challenging due to the extensive differential diagnosis, but testing can help identify specific pathophysiologies and lead to more targeted therapies 2.
  • Gastrointestinal and Pancreatic Diseases: Screening for these diseases often involves stool testing to assess various conditions, providing insights into inflammatory, watery, and malabsorptive states 3.
  • Chronic Abdominal Pain: In the absence of red flag features, most patients with chronic abdominal pain have a benign cause or a functional disorder, and gut testing can help differentiate between organic and functional causes 4.

Pathophysiological Insights

Research into gut disorders has provided insights into the pathophysiology of conditions like IBS, suggesting that inflammation may play a key role 5.

  • Inflammation in IBS: Studies have shown the presence of mucosal inflammation and the potential involvement of neuroinflammation via the gut-brain axis in IBS patients 5.
  • Abdominal Pain in IBD: The etiology of abdominal pain in inflammatory bowel disease (IBD) is multifactorial, including peripheral sensitization by inflammation, coexistent IBS, and alteration of the brain-gut axis, highlighting the need for a multidisciplinary approach to management 6.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Screening for gastrointestinal and pancreatic diseases.

Advances in clinical chemistry, 2022

Research

Chronic Abdominal Pain in General Practice.

Digestive diseases (Basel, Switzerland), 2021

Research

The role of inflammation in irritable bowel syndrome (IBS).

Journal of inflammation research, 2018

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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