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Last updated: July 15, 2025View editorial policy

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Differential Diagnosis for 3 Month Old with Dark/Black Colored Stools

  • Single Most Likely Diagnosis
    • Melena due to swallowed maternal blood: This is a common cause of black stools in infants, especially if the mother has bleeding gums or is breastfeeding with cracked nipples, leading to the infant swallowing small amounts of blood.
  • Other Likely Diagnoses
    • Gastrointestinal bleeding from a milk protein allergy or other allergic reactions: Infants can have allergic reactions to proteins in milk, leading to gastrointestinal symptoms including bleeding.
    • Gastroesophageal reflux disease (GERD) with bleeding: GERD can cause irritation and potentially bleeding in the esophagus or stomach, leading to black stools.
    • Intussusception: Although more commonly associated with abdominal pain and currant jelly stool, intussusception can sometimes present with melena.
  • Do Not Miss Diagnoses
    • Volvulus: A condition where a portion of the intestine twists, cutting off blood flow, which can lead to ischemia and potentially life-threatening complications if not promptly treated.
    • Intestinal obstruction: Any condition causing a blockage in the intestines can lead to severe complications, including ischemia and perforation, if not quickly diagnosed and treated.
    • Necrotizing enterocolitis: A serious condition more common in premature infants but can occur in term infants, where portions of the bowel tissue die.
  • Rare Diagnoses
    • Hirschsprung’s disease with enterocolitis: A congenital condition affecting the large intestine, leading to severe constipation or intestinal obstruction, and potentially life-threatening enterocolitis.
    • Congenital vascular malformations: Rare conditions where there are abnormalities in the blood vessels that can lead to gastrointestinal bleeding.
    • Ingested substances (e.g., iron supplements, certain medications): Although less common in infants, ingestion of certain substances can cause black stools.

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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