What is the treatment for a fungal urinary tract infection (UTI) caused by yeast?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: July 22, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Treatment of Yeast in Urine (Fungal UTI)

Fluconazole is the drug of first choice for treating fungal urinary tract infections, at a dose of 200-400 mg (3-6 mg/kg) daily for 2 weeks for most cases of yeast in urine. 1

Diagnostic Approach

Before initiating treatment, it's important to distinguish between asymptomatic candiduria and symptomatic infection:

  • Asymptomatic candiduria in most patients does not require treatment except in:
    • Neutropenic patients
    • Very low-birth-weight infants
    • Patients undergoing urologic procedures 2
  • Symptomatic infection requires treatment based on the site of infection (cystitis vs. pyelonephritis)

Treatment Algorithm

1. For Candida Cystitis (Lower UTI)

  • First-line: Oral fluconazole 200-400 mg (3-6 mg/kg) daily for 2 weeks 1
  • For fluconazole-resistant C. glabrata:
    • AmB deoxycholate 0.3-0.6 mg/kg daily for 1-7 days, with or without oral flucytosine (25 mg/kg 4 times daily) 1
    • Alternative: Monotherapy with oral flucytosine 25 mg/kg 4 times daily for 2 weeks 1
  • For C. krusei infections:
    • AmB deoxycholate 0.3-0.6 mg/kg daily for 1-7 days 1

2. For Candida Pyelonephritis (Upper UTI)

  • First-line: Oral fluconazole 200-400 mg (3-6 mg/kg) daily for 2 weeks 1
  • For fluconazole-resistant strains:
    • AmB deoxycholate 0.5-0.7 mg/kg daily with or without flucytosine (25 mg/kg 4 times daily) for 2 weeks 1
    • Alternative: Flucytosine alone at 25 mg/kg 4 times daily for 2 weeks 1

3. For Fungus Balls

  • Surgical intervention is strongly recommended in adults 1
  • Antifungal treatment as noted above for cystitis or pyelonephritis 1
  • If nephrostomy tubes are present, irrigation with AmB deoxycholate (25-50 mg in 200-500 mL sterile water) 1

Special Considerations

Refractory Cases

For persistent candiduria despite appropriate antifungal therapy:

  • Evaluate for structural abnormalities or obstruction
  • Consider bladder irrigation with AmB deoxycholate (50 mg/L sterile water) for refractory cystitis due to resistant organisms like C. glabrata and C. krusei 1

Important Caveats

  1. Catheter management: Remove or replace indwelling catheters if possible, as this alone may resolve candiduria in up to 50% of cases 3

  2. Drug selection considerations:

    • Lipid formulations of AmB do not achieve adequate urine concentrations and should not be used 1
    • Newer azoles (except fluconazole) and echinocandins have minimal excretion into urine and are generally ineffective 1, 3
    • Echinocandins may be considered for renal parenchymal infections despite poor urinary concentrations 1
  3. Treatment duration: Continue treatment until symptoms have resolved and urine cultures no longer yield Candida species 1

  4. Diagnostic pitfalls: Colony count in urine, especially with catheters present, cannot reliably differentiate infection from colonization 1

By following this treatment algorithm and considering the specific Candida species and site of infection, most fungal urinary tract infections can be successfully treated, reducing morbidity and improving quality of life.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Candida urinary tract infections in adults.

World journal of urology, 2020

Research

Candida urinary tract infections: treatment options.

Expert review of anti-infective therapy, 2007

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.