What is the treatment for Lactobacillus (a type of bacteria) in urine?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: August 4, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Treatment of Lactobacillus in Urine

Lactobacillus species in urine are generally considered contaminants or non-pathogenic organisms and do not require treatment unless the patient is symptomatic with a confirmed urinary tract infection.

Understanding Lactobacillus in Urine Specimens

Lactobacillus species are part of the normal bacterial flora of the vagina and are typically considered contaminants when cultured from urine specimens, particularly in female patients 1. According to the American Academy of Pediatrics guidelines, "Organisms such as Lactobacillus spp, coagulase-negative staphylococci, and Corynebacterium spp are not considered clinically relevant urine isolates for otherwise healthy, 2- to 24-month-old children" 2.

Key Considerations:

  • Asymptomatic bacteriuria: The Infectious Diseases Society of America (IDSA) strongly recommends against treating asymptomatic bacteriuria in most patient populations 2.
  • Contamination vs. infection: Lactobacillus in urine often represents contamination from the vaginal flora rather than true infection.
  • Symptomatic assessment: Treatment decisions should be based on the presence of urinary symptoms, not merely the presence of bacteria in urine.

When to Consider Treatment

Treatment for Lactobacillus in urine should only be considered in the following scenarios:

  1. Symptomatic infection: Patient presents with classic UTI symptoms (dysuria, frequency, urgency) AND Lactobacillus is the only organism isolated at significant colony counts (≥50,000 CFUs/mL) 2.

  2. Special populations:

    • Pregnant women
    • Patients undergoing urological procedures with expected mucosal bleeding
    • Immunocompromised patients with symptoms
  3. Rare cases of invasive infection: There have been rare documented cases of Lactobacillus causing septic urinary infection, particularly in patients with predisposing factors such as diabetes and urinary stasis 3.

Treatment Approach When Indicated

If treatment is deemed necessary based on symptomatic presentation and clinical judgment:

First-line options:

  • Nitrofurantoin 100 mg twice daily for 5 days (high evidence level) 4, 5
  • Fosfomycin 3g single dose (moderate evidence level) 4
  • Trimethoprim-sulfamethoxazole 160/800 mg twice daily for 3 days (if local resistance <20%) 4, 5

Alternative options:

  • Amoxicillin-clavulanate 500/125 mg twice daily for 3-7 days (moderate evidence level) 4
  • Cephalexin 500 mg four times daily for 5-7 days (moderate evidence level) 4

Prevention Strategies for Recurrent UTIs

For patients with recurrent UTIs where Lactobacillus has been isolated:

  1. Probiotic approach: Ironically, certain Lactobacillus strains (particularly L. rhamnosus GR-1 and L. reuteri RC-14) have shown efficacy as probiotics in preventing recurrent UTIs 6.

  2. For postmenopausal women: Vaginal estrogen therapy with or without lactobacillus-containing probiotics is recommended to reduce the risk of future UTIs 2, 4.

  3. Non-antibiotic alternatives:

    • Cranberry products (modest effect) 2
    • Methenamine hippurate 2
    • Increased fluid intake 4

Important Caveats and Pitfalls

  1. Avoid overtreatment: Treating asymptomatic bacteriuria may foster antimicrobial resistance and increase the number of recurrent UTI episodes 2.

  2. Culture interpretation: In symptomatic women, even growth as low as 10² CFU/mL could reflect infection, while in asymptomatic women, higher counts may represent colonization 5.

  3. Repeat cultures: Only repeat urine cultures when symptoms persist following antimicrobial therapy; do not perform microbiological reassessment after successful treatment 2.

  4. Antibiotic stewardship: Follow antibiotic stewardship principles to avoid unnecessary antibiotic use 4.

By following these evidence-based guidelines, clinicians can appropriately manage Lactobacillus in urine while minimizing unnecessary antibiotic use and its associated risks.

References

Research

Lactobacillus delbrueckii as the cause of urinary tract infection.

Journal of clinical microbiology, 2009

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Urinary Tract Infection Management

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Diagnosis and treatment of urinary tract infections across age groups.

American journal of obstetrics and gynecology, 2018

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.