What are the diagnostic approaches and treatment options for autoimmune encephalitis?

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Diagnostic Approach and Treatment of Autoimmune Encephalitis

A comprehensive diagnostic workup including brain MRI, CSF analysis, EEG, and autoantibody testing is essential for diagnosing autoimmune encephalitis, followed by prompt immunotherapy with corticosteroids as first-line treatment to reduce morbidity and mortality. 1

Clinical Presentation

Autoimmune encephalitis (AE) presents with various neurological and psychiatric manifestations depending on the anatomical regions involved:

  • Limbic encephalitis: Memory deficits, confusion, seizures
  • Cortical/subcortical encephalitis: Cognitive impairment, seizures, focal neurological deficits
  • Striatal encephalitis: Movement disorders, psychiatric symptoms
  • Diencephalic encephalitis: Sleep disturbances, autonomic dysfunction
  • Brainstem encephalitis: Cranial nerve abnormalities, ataxia
  • Cerebellar encephalitis: Ataxia, dysarthria
  • Meningoencephalitis: Headache, fever, altered mental status
  • Encephalomyelitis: Combined brain and spinal cord symptoms 1

Diagnostic Algorithm

Step 1: Confirm Brain Pathology Suggestive of AE

  1. Brain MRI with and without contrast

    • Look for bilateral limbic encephalitis (sufficient for definite AE diagnosis when CSF viral studies are negative)
    • Other patterns: cortical/subcortical, striatal, diencephalic, brainstem abnormalities 1, 2
  2. EEG

    • Perform if MRI is negative or patient has encephalopathy/seizures
    • Look for focal slowing, lateralized periodic discharges, extreme delta brush (in NMDAR encephalitis)
    • Rule out subclinical status epilepticus 1, 2
  3. Brain FDG-PET

    • Consider when MRI is negative but clinical suspicion remains high
    • More sensitive than MRI in some cases
    • Common patterns: bilateral temporal hypermetabolism or bilateral occipito-parietal hypometabolism 1, 2

Step 2: Confirm Inflammatory Etiology and Rule Out Alternatives

  1. Lumbar Puncture and CSF Analysis

    • Cell count and differential
    • Protein, glucose, CSF/serum glucose ratio
    • IgG index, IgG synthesis rate, oligoclonal bands
    • Neuronal autoantibodies panel (test before immunotherapy)
    • Rule out infectious causes (viral PCR, bacterial cultures) 1, 2
  2. Blood Tests

    • Neuronal autoantibody panel (collect before IVIg or PLEX)
    • Antithyroid antibodies
    • Inflammatory markers
    • Antinuclear antibodies
    • Immunoglobulins 1, 2
  3. Brain Biopsy

    • Consider if diagnosis remains uncertain after initial testing 1

Step 3: Screen for Associated Neoplasm

  1. CT chest, abdomen, and pelvis with contrast (or MRI if CT contraindicated)
  2. Mammogram/breast MRI in relevant cases
  3. Pelvic or testicular ultrasound in relevant cases
  4. Whole body FDG-PET if initial screen negative 1

Treatment Algorithm

First-Line Therapy

  1. High-dose corticosteroids (IV methylprednisolone)

    • Start once infection is ruled out
    • Relative contraindications: uncontrolled hypertension, diabetes, acute peptic ulcer, severe behavioral symptoms that worsen with steroids 1
  2. Intravenous Immunoglobulin (IVIG)

    • Consider if steroids are contraindicated or ineffective
    • Preferred in agitated patients and those with bleeding disorders 1
  3. Plasma Exchange (PLEX)

    • 5-10 sessions every other day
    • Consider first in patients with severe hyponatremia, high thromboembolic risk, or associated demyelination
    • Less suitable for agitated patients 1
  4. Combined First-Line Therapies

    • Consider in severe presentations (e.g., NMDAR-antibody encephalitis, new-onset refractory status epilepticus, severe dysautonomia) 1

Second-Line Therapy

  1. Rituximab

    • Consider in known or suspected antibody-mediated autoimmunity (e.g., NMDAR-antibody encephalitis)
    • If no improvement 2-4 weeks after combined first-line therapy 1
  2. Cyclophosphamide

    • Consider in known or suspected cell-mediated autoimmunity (e.g., classical paraneoplastic syndrome) 1
  3. Experimental Therapies

    • Consider tocilizumab or bortezomib if no improvement with conventional second-line therapies 1

Maintenance Therapy

  • Gradual oral prednisone taper or
  • Monthly IVIG or
  • Monthly IV methylprednisolone 1

Common Pitfalls and Caveats

  1. Delayed Diagnosis

    • Don't wait for antibody results to start treatment if clinical suspicion is high
    • Initiate immunotherapy promptly after ruling out infection 1
  2. Misdiagnosis

    • Consider differential diagnoses including infectious encephalitis, metabolic encephalopathy, and primary psychiatric disorders
    • Use Table 3 in the guidelines for specific differential diagnoses by anatomical syndrome 1
  3. Inadequate Cancer Screening

    • Thorough cancer screening is essential, especially for paraneoplastic syndromes
    • Consider additional testing if initial screen is negative 1
  4. Antibody Testing Interpretation

    • Some antibodies are more sensitive in serum, others in CSF
    • GAD65 antibodies are clinically relevant at high titers but usually irrelevant at low titers 2
    • Collect samples before immunotherapy to avoid false results 2
  5. Treatment Response Assessment

    • Monitor clinical, radiological, and electrophysiological improvement
    • Consider escalating therapy if no improvement after initial treatment 1

By following this structured approach to diagnosis and treatment, clinicians can improve outcomes for patients with autoimmune encephalitis through early recognition and appropriate management.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Autoimmune Epilepsy Diagnosis and Treatment

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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