What is the treatment for candiduria (fungal infection of the urine)?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: August 9, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Treatment of Candiduria (Fungal Infection of the Urine)

For candiduria, treatment depends on whether the patient is symptomatic or asymptomatic, with fluconazole 200 mg daily for 2 weeks being the first-line treatment for symptomatic infections. 1, 2

Diagnostic Assessment

  • Determine whether candiduria represents contamination, colonization, or true infection
  • Repeat urine culture to confirm persistent candiduria
  • Evaluate for risk factors: catheterization, antibiotics, diabetes, immunosuppression

Treatment Algorithm

Asymptomatic Candiduria

  • No treatment recommended for most patients 1, 2
  • Exceptions (high-risk patients requiring treatment):
    • Neutropenic patients
    • Very low birth weight neonates
    • Patients undergoing urologic procedures
      • For urologic procedures: Fluconazole 200-400 mg daily or amphotericin B deoxycholate 0.3-0.6 mg/kg daily for several days before and after the procedure 1

Symptomatic Candiduria

For Cystitis

  • First-line: Fluconazole 200 mg (3 mg/kg) daily for 2 weeks 1, 2, 3
    • Excellent urinary penetration and efficacy against most Candida species
  • For fluconazole-resistant organisms (especially C. glabrata):
    • Amphotericin B deoxycholate 0.3-0.6 mg/kg daily for 1-7 days, OR
    • Oral flucytosine 25 mg/kg 4 times daily for 7-10 days 1, 2
    • Amphotericin B bladder irrigation may be useful for fluconazole-resistant species 1

For Pyelonephritis

  • First-line: Fluconazole 200-400 mg (3-6 mg/kg) daily for 2 weeks 1
  • For fluconazole-resistant strains:
    • Amphotericin B deoxycholate 0.5-0.7 mg/kg daily with or without flucytosine 25 mg/kg 4 times daily for 2 weeks, OR
    • Flucytosine alone at 25 mg/kg 4 times daily for 2 weeks 1

For Fungus Balls

  • Surgical intervention strongly recommended 1, 2
  • Systemic antifungal therapy:
    • Fluconazole 200-400 mg (3-6 mg/kg) daily, OR
    • Amphotericin B deoxycholate 0.5-0.7 mg/kg daily with or without flucytosine 1
  • If access to renal collecting system is available: Irrigation with amphotericin B (50 mg/L sterile water) as adjunct therapy 1

Important Management Considerations

Non-pharmacological Interventions

  • Remove indwelling bladder catheters if present 2, 4
  • Eliminate urinary tract obstruction 2
  • Consider removal/replacement of nephrostomy tubes or stents 2
  • Correct predisposing factors (obstruction, stones, foreign bodies) 2, 5

Treatment Duration

  • Continue until symptoms have resolved and urine cultures no longer yield Candida species 1, 2
  • Minimum of 2 weeks for symptomatic infections 2

Follow-up

  • Obtain follow-up urine cultures to document clearance 2

Common Pitfalls to Avoid

  1. Overtreatment: Most asymptomatic candiduria cases resolve spontaneously without treatment 4, 5
  2. Inappropriate antifungal selection: Echinocandins (caspofungin, micafungin, anidulafungin) are generally ineffective for UTIs due to minimal urinary excretion 2, 6
  3. Failure to identify Candida species: C. glabrata and C. krusei may be fluconazole-resistant and require alternative therapy 2, 7
  4. Inadequate duration: Premature discontinuation before symptom resolution and culture clearance may lead to recurrence 1, 2
  5. Neglecting underlying factors: Failing to address predisposing conditions like catheters or obstruction reduces treatment success 2, 4

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Management of Candida Urinary Tract Infections

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Candida urinary tract infections in adults.

World journal of urology, 2020

Research

Candiduria: a review of clinical significance and management.

Saudi journal of kidney diseases and transplantation : an official publication of the Saudi Center for Organ Transplantation, Saudi Arabia, 2008

Research

Candida urinary tract infections: treatment options.

Expert review of anti-infective therapy, 2007

Research

Candida urinary tract infections--treatment.

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2011

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.