Treatment for Babesia microti Infection Confirmed by PCR
For patients with Babesia microti infection confirmed by PCR, the recommended first-line treatment is atovaquone 750 mg orally every 12 hours plus azithromycin 500-1000 mg orally on day 1, followed by 250 mg once daily for a total of 7-10 days. 1
Treatment Algorithm
Initial Assessment and Treatment Selection
Confirm active infection:
Assess disease severity:
Mild to moderate disease:
Severe disease (high-grade parasitemia >10%, significant hemolysis, or renal/hepatic/pulmonary compromise):
Dosing Regimens
Atovaquone plus azithromycin (first-line):
Clindamycin plus quinine (for severe cases):
Special Considerations
Immunocompromised patients:
Treatment monitoring:
Important Caveats
Asymptomatic patients with positive PCR should have testing repeated, and treatment should be considered only if parasitemia persists for >3 months 2, 1
Drug adverse effects:
Treatment failures are more common in patients with:
- Splenectomy
- HIV infection
- Concurrent corticosteroid therapy 2
Consider coinfection with Lyme disease or Anaplasmosis in patients with persistent symptoms despite appropriate therapy 1
Drug resistance: Atovaquone resistance can emerge when used as monotherapy, supporting the importance of combination therapy 4
The evidence strongly supports atovaquone plus azithromycin as the preferred first-line regimen due to its comparable efficacy and superior tolerability compared to clindamycin plus quinine 2, 1. This recommendation is based on clinical trials showing that both regimens effectively clear parasitemia, but the atovaquone-azithromycin combination causes significantly fewer adverse effects 2.