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Last updated: September 13, 2025View editorial policy

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Differential Diagnosis for Green Stools in a 6-Month-Old

Single Most Likely Diagnosis

  • Normal variation in stool color: At 6 months, infants are often introduced to a variety of foods, which can cause changes in stool color. Green stools can be a result of the consumption of green vegetables or iron supplements, which are common at this age.

Other Likely Diagnoses

  • Gastroenteritis: Viral or bacterial infections can cause green stools due to the presence of bile and the rapid transit of stool through the intestines.
  • Food intolerance or allergy: An intolerance or allergy to certain foods, such as dairy or soy, can lead to green stools.
  • Overfeeding or foremilk imbalance: In breastfed infants, an imbalance of foremilk and hindmilk can cause green, frothy stools.

Do Not Miss Diagnoses

  • Intussusception: A condition where a part of the intestine telescopes into another, which can cause bloody, green stools, and is a medical emergency.
  • Gastrointestinal obstruction: Any obstruction in the intestines can cause vomiting, abdominal distension, and changes in stool color, including green stools.
  • Infectious diarrhea (e.g., Salmonella, E. coli): Certain bacterial infections can cause severe diarrhea, which may be green in color, and can lead to dehydration and other complications.

Rare Diagnoses

  • Biliary atresia: A congenital condition where the bile ducts are blocked, leading to green stools due to the absence of bile in the stool.
  • Cystic fibrosis: A genetic disorder that can cause malabsorption and changes in stool color, including green stools.
  • Congenital infections (e.g., congenital CMV): Certain congenital infections can cause gastrointestinal symptoms, including changes in stool color.

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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