What are the causes and treatment options for autoimmune encephalitis?

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Last updated: September 19, 2025View editorial policy

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Causes of Autoimmune Encephalitis

Autoimmune encephalitis is primarily caused by immune-mediated inflammation triggered by viral infections, malignancies, immune checkpoint inhibitors, and idiopathic mechanisms that lead to antibody production against neuronal antigens. 1

Etiological Classification

1. Idiopathic Causes

  • Spontaneous autoimmune reactions without identifiable triggers
  • More common in patients with personal or family history of other autoimmune disorders 1
  • Often results in a monophasic disease course 1

2. Paraneoplastic Causes

  • Associated with underlying malignancies:
    • Small cell lung cancer
    • Thymoma
    • Gynecological malignancies
    • Breast cancer
    • Seminoma 2
    • Ovarian teratomas (especially in anti-NMDAR encephalitis) 1
  • Risk factors include:
    • Advanced age
    • Smoking history
    • Unintentional weight loss 1
  • Often presents with a progressive course that plateaus after cancer treatment 1

3. Post-infectious Triggers

  • Herpes simplex virus (HSV) encephalitis is a well-established trigger 1
    • Up to 24.5% of HSV encephalitis patients develop NMDAR antibodies within 3 months 1
  • Other viral infections associated with autoimmune encephalitis:
    • Varicella zoster virus
    • Epstein-Barr virus
    • Influenza A virus 1
  • Typically presents with viral-like prodrome or fever before neurological symptoms 1

4. Iatrogenic/Medication-Induced

  • Immune checkpoint inhibitors (ICIs) used in cancer treatment
    • Can cause accelerated paraneoplastic encephalitis in advanced cancer patients 1, 2
    • Expands the range of affected patients to include those with melanoma and renal cell carcinoma 2
  • TNFα inhibitors 1
  • Symptoms typically appear within 3 months of treatment initiation 2

Serological Classification

1. Antibodies to Intracellular Antigens

  • Classical onconeuronal antibodies
  • Strongly associated with underlying malignancies 1

2. Antibodies to Surface Antigens (High Clinical Relevance)

  • NMDAR (N-methyl-D-aspartate receptor) - most common cause of autoimmune encephalitis in patients <30 years 1
  • AMPAR
  • LGI1
  • CASPR2
  • GABAR A/B
  • DPPX
  • Glycine receptor
  • AQP4
  • MOG
  • GFAP 1

3. Antibodies to Surface Antigens (Low Clinical Relevance)

  • VGKC
  • VGCC 1

Clinical Presentation Patterns

Autoimmune encephalitis typically presents with:

  • Acute or subacute onset (duration <3 months) 1
  • Polysyndromic presentation (clinical hallmark) 1
  • Multifocal brain inflammation with possible involvement of meninges, spinal cord, and peripheral nervous system 1

Chronic presentations are primarily seen in:

  • LGI1-antibody encephalitis
  • CASPR2-antibody encephalitis
  • DPPX-antibody encephalitis
  • GAD65-antibody encephalitis 1

Diagnostic Approach

  1. Brain MRI with contrast

    • Look for bilateral limbic encephalitis (sufficient for definite AE diagnosis with negative CSF viral studies) 1, 3
    • Other patterns: cortical/subcortical, striatal, diencephalic, brainstem changes 1
    • May be normal in up to 20% of cases 3
  2. CSF Analysis

    • Collect 8-15 mL total CSF in 3-4 sequential tubes 3
    • Test for cell count, protein, glucose, and neural autoantibody panel 3
  3. Antibody Testing

    • Test both serum and CSF (70-80% detection rate) 3
    • Some antibodies more sensitive in CSF (NMDAR, GFAP)
    • Others more sensitive in serum (onconeuronal, LGI1, AQP4) 3
  4. Additional Testing

    • FDG-PET scan when other tests inconclusive 3
    • Screen for associated neoplasms 3
    • Exclude other etiologies with serum studies 3

Treatment Approach

  1. First-line Immunotherapy

    • IV corticosteroids (70-80% response rate)
    • IVIG (60-70% response rate)
    • Plasma exchange (50-60% response rate) 3
    • Can be combined in severe cases 4
  2. Second-line Agents (for unresponsive cases)

    • Rituximab
    • Cyclophosphamide 4
  3. Refractory Cases

    • Cytokine-based drugs (tocilizumab, interleukin-2/basiliximab, anakinra, tofacitinib)
    • Plasma cell-depleting agents (bortezomib, daratumumab)
    • Treatments targeting intrathecal immune cells (intrathecal methotrexate, natalizumab) 4

Important Clinical Considerations

  • Relapses are rare in autoimmune encephalitis (unlike MS) and often result from insufficient treatment or rapid immunotherapy interruption 1
  • Autoimmune encephalitis should be considered in patients with viral encephalitis who show slow response to antivirals or develop recrudescent symptoms 1
  • Early immunotherapy is critical for favorable outcomes - don't delay while waiting for antibody results 3
  • Anti-NMDAR encephalitis is now recognized as the most common cause of encephalitis in patients <30 years of age 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Diagnostic Approach to Autoimmune Encephalopathy

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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