Can I take Akkermansia and Augmentin (amoxicillin/clavulanate) together?

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Taking Akkermansia and Augmentin Together

Taking Akkermansia muciniphila probiotics with Augmentin (amoxicillin/clavulanate) is not recommended as Augmentin will likely kill the Akkermansia bacteria, negating its benefits.

Rationale for This Recommendation

Impact of Antibiotics on Probiotics

Augmentin is a broad-spectrum antibiotic combination containing amoxicillin (a penicillin-class antibiotic) and clavulanic acid (a beta-lactamase inhibitor). Research shows that Akkermansia muciniphila is susceptible to many antibiotics, including ampicillin, which is closely related to amoxicillin 1. When these agents are taken together:

  • Augmentin will likely kill or significantly reduce the Akkermansia population in your gut
  • The therapeutic benefits of the probiotic would be negated
  • You would essentially be wasting the probiotic supplement

Antibiotic Effects on Gut Microbiome

Antibiotics like Augmentin can cause significant disruption to the gut microbiome:

  • Augmentin is associated with antibiotic-associated diarrhea and other gastrointestinal side effects 2
  • Antibiotic exposure can disrupt the microbial balance of the intestines, potentially contributing to long-term adverse health effects 2
  • Amoxicillin-clavulanate has higher rates of gastrointestinal adverse effects compared to some other antibiotics 2

Timing Recommendations

If you must take both Akkermansia and Augmentin for medical reasons:

  1. Complete your Augmentin course first

    • Follow your prescribed antibiotic regimen exactly as directed
    • Augmentin is typically prescribed for 5-10 days depending on the infection 2, 3
  2. Wait before starting Akkermansia

    • Allow at least 2-3 days after completing your antibiotic course before starting Akkermansia
    • This gives time for antibiotic levels to decrease in your system
  3. Consider extended probiotic use

    • Akkermansia may actually help restore gut health after antibiotic treatment 1
    • Research in mice shows that pasteurized Akkermansia can help protect against antibiotic-associated diarrhea 1

Special Considerations

Importance of Completing Antibiotic Treatment

If you've been prescribed Augmentin for a bacterial infection:

  • Complete the full course as prescribed by your healthcare provider
  • Stopping antibiotics early can lead to treatment failure and antibiotic resistance 2
  • Augmentin is a first-line treatment for many common infections including sinusitis, respiratory tract infections, and others 2, 3

Potential Benefits of Akkermansia After Antibiotics

Recent research suggests that taking Akkermansia after completing antibiotic treatment may actually be beneficial:

  • Pasteurized Akkermansia has been shown to help restore gut microbiota after antibiotic disruption 1
  • It may help reduce inflammation and restore intestinal barrier function after antibiotic use 1
  • It could potentially help prevent antibiotic-associated diarrhea 1

Bottom Line

While Akkermansia shows promise as a "next-generation probiotic" with potential health benefits 4, taking it simultaneously with Augmentin would be counterproductive. For optimal results, complete your antibiotic course first, then begin Akkermansia supplementation after a short waiting period to help restore your gut microbiome.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Acute Bacterial Sinusitis Treatment Guidelines

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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