What is the diagnostic approach for microbial keratitis?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: October 6, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Diagnostic Approach for Microbial Keratitis

The diagnosis of microbial keratitis requires a systematic approach including detailed history, comprehensive slit-lamp biomicroscopy, and appropriate laboratory testing with cultures and smears in specific clinical scenarios. 1

History Taking

  • Assess ocular symptoms including pain, redness, discharge, blurred vision, photophobia, and duration of symptoms 1
  • Obtain contact lens history including wearing schedule, overnight wear, lens type, solutions used, hygiene protocol, and activities while wearing lenses (swimming, showering) 1
  • Review ocular history for risk factors such as HSV keratitis, VZV keratitis, previous bacterial keratitis, trauma, dry eye, and previous ocular surgeries 1
  • Evaluate medical history including immune status, rosacea, atopy, diabetes, and history of drug-resistant infections like MRSA 1
  • Document current and recently used ocular and systemic medications 1

Physical Examination

Visual Acuity

  • Document baseline visual acuity even though it may be compromised by discomfort and inflammation 1

External Examination

  • Assess general appearance including skin conditions and overall hygiene 1
  • Examine facial features for conditions like rosacea or herpes zoster 1
  • Evaluate globe position, eyelids, eyelid closure, and nasolacrimal apparatus 1
  • Check conjunctival injection and chemosis 1
  • Consider corneal sensation testing when appropriate 1

Slit-Lamp Biomicroscopy

  • Examine eyelids for inflammation, ulceration, meibomian gland dysfunction, and abnormalities like trichiasis or lagophthalmos 1
  • Assess conjunctiva for discharge, inflammation, morphologic alterations, and foreign bodies 1
  • Evaluate cornea for:
    • Epithelial defects, punctate keratopathy, and edema 1
    • Stromal infiltrates, noting their location, size (particularly those >1mm), shape, depth, and character of margins 1
    • Ulceration, thinning, and perforation 1
    • Endothelial plaques 1
    • Previous inflammation signs (scarring, neovascularization) 1
  • Apply fluorescein or rose bengal/lissamine green staining to identify epithelial defects, distinguishing between staining and pooling in areas of thinning 1
  • Check anterior chamber for inflammation, including cell and flare, hypopyon, and fibrin 1
  • Examine anterior vitreous for inflammation 1
  • Assess the contralateral eye for clues to etiology 1

Laboratory Testing

  • Most community-acquired cases of bacterial keratitis can be managed with empiric therapy without cultures 1
  • Smears and cultures are specifically indicated when:
    • Corneal infiltrate is central, large (≥2mm), or associated with significant stromal involvement or melting 1
    • Infection is chronic or unresponsive to broad-spectrum antibiotics 1
    • Patient has history of corneal surgeries 1
    • Atypical features suggest fungal, amoebic, or mycobacterial keratitis 1
    • Multiple infiltrates are present on the cornea 1
    • There are ≥1+ cells in the anterior chamber 1

Culture and Staining Recommendations

  • For small, peripheral infiltrates without stromal melting: culture and staining are optional 1
  • For large, central infiltrates with stromal melting or atypical appearance: obtain cultures and Gram/Giemsa stains 1
  • For post-surgical infiltrates: obtain cultures with Gram, potassium hydroxide, Calcofluor white, and acid-fast stains 1

Common Pitfalls and Caveats

  • Clinical appearance alone may be insufficient to differentiate bacterial from fungal keratitis, with cornea specialists correctly identifying the causative organism in less than 70% of cases 1
  • Initial misdiagnosis of microbial keratitis as a contact lens peripheral ulcer (CLPU) can occur; monitor carefully for expected improvement after lens discontinuation 2
  • Hypopyon in bacterial keratitis is usually sterile; aqueous or vitreous taps should not be performed unless there is high suspicion of endophthalmitis 1
  • Distinguishing between epithelial staining and pooling of stain in areas of corneal thinning is important; pooling can be wicked away with a cotton swab or irrigation 1
  • Prompt diagnosis and treatment are essential for good visual outcomes, as untreated or severe bacterial keratitis may progress rapidly (within 24 hours) to corneal perforation 1, 2

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Prompt diagnosis and treatment of microbial keratitis in a daily wear lens.

Optometry and vision science : official publication of the American Academy of Optometry, 2009

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.