What are the basic autoimmune tests to request on initial diagnosis?

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Last updated: October 14, 2025View editorial policy

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Basic Autoimmune Tests for Initial Diagnosis

The diagnosis of systemic autoimmune diseases requires a panel of specific laboratory tests, including anti-nuclear antibodies (ANA), anti-double-stranded DNA (anti-dsDNA), and anti-extractable nuclear antigens (anti-ENA) antibodies as the fundamental first-line tests. 1

Core Initial Autoimmune Panel

Anti-Nuclear Antibodies (ANA)

  • ANA testing is the first-level test and reference method for laboratory diagnosis of systemic autoimmune rheumatic diseases (SARD) 1
  • Indirect immunofluorescence assay (IIFA) on HEp-2 cells remains the gold standard method for ANA detection 1
  • A screening dilution of 1:160 is recommended as it provides better specificity while maintaining appropriate sensitivity 1
  • Both nuclear and cytoplasmic patterns should be reported and specified when detected 1

Anti-Double-Stranded DNA (anti-dsDNA)

  • Should be tested when ANA is positive and there is clinical suspicion of systemic lupus erythematosus (SLE) 1
  • The Farr assay and Crithidia luciliae immunofluorescence test (CLIFT) offer high clinical specificity 1
  • Provides important diagnostic and prognostic information for SLE 1

Anti-Extractable Nuclear Antigens (anti-ENA)

  • Testing should follow a positive ANA result 1
  • Common ENA specificities to test include:
    • Anti-Ro/SSA (associated with SLE, Sjögren's syndrome)
    • Anti-La/SSB (associated with Sjögren's syndrome, SLE)
    • Anti-Sm (highly specific for SLE)
    • Anti-RNP (associated with mixed connective tissue disease, SLE)
    • Anti-Scl-70 (associated with systemic sclerosis)
    • Anti-Jo-1 (associated with polymyositis/dermatomyositis) 1, 2

Disease-Specific Additional Testing

For Suspected Autoimmune Hepatitis

  • Anti-smooth muscle antibodies (SMA)
  • Anti-liver/kidney microsome type 1 (anti-LKM-1)
  • Anti-liver cytosol type 1 (anti-LC1)
  • Anti-soluble liver antigen/liver pancreas (anti-SLA/LP)
  • Antimitochondrial antibodies (AMA) to exclude primary biliary cirrhosis 1

For Suspected Autoimmune Encephalitis

  • CSF and serum neuronal autoantibodies panel
  • Inflammatory markers in CSF (IgG index, oligoclonal bands) 1

For Suspected Vasculitis

  • Antineutrophil cytoplasmic antibodies (ANCA)
  • Perinuclear ANCA (p-ANCA) and cytoplasmic ANCA (c-ANCA) 1

Complementary Tests

  • Complete blood count with differential
  • Inflammatory markers (C-reactive protein, erythrocyte sedimentation rate)
  • Complement components (C3, C4) - particularly important for SLE monitoring
  • Immunoglobulin levels (IgG, IgA, IgM) 1, 3
  • Rheumatoid factor and anti-cyclic citrullinated peptide (anti-CCP) antibodies if arthritis is present 2, 3

Important Considerations

Testing Methodology

  • Laboratory should specify the methods used for detecting autoantibodies when reporting results 1
  • In-house assays should be standardized according to international standards 1
  • Clinicians should develop a relationship with laboratory pathologists to investigate inconsistent or surprising results 4

Interpretation Caveats

  • Autoantibody testing should only be performed in patients with reasonable clinical suspicion of autoimmune disease 4
  • A positive ANA at low titers can be found in healthy individuals and should be interpreted in clinical context 1
  • False negative results can occur with alternative methods to IIFA; if clinical suspicion is strong and alternative method is negative, IIFA should be performed 1

Follow-up Testing

  • ANA testing is primarily intended for diagnostic purposes, not for monitoring disease progression 1
  • Anti-dsDNA and complement levels may be useful for monitoring SLE disease activity 1, 3
  • Repeated testing of stable markers should be avoided unless there is a significant change in clinical presentation 1, 4

By following this systematic approach to autoimmune testing, clinicians can efficiently establish diagnoses, assess prognosis, and make appropriate treatment decisions while avoiding unnecessary testing.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Laboratory testing in autoimmune rheumatic diseases.

Best practice & research. Clinical rheumatology, 2004

Research

Autoantibody testing for autoimmune disease.

Clinics in chest medicine, 2010

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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