What is the treatment for autoimmune encephalitis?

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Treatment of Autoimmune Encephalitis

The treatment of autoimmune encephalitis should begin with first-line immunotherapy consisting of high-dose corticosteroids, intravenous immunoglobulin (IVIG), or plasma exchange (PLEX), followed by second-line agents such as rituximab or cyclophosphamide in refractory cases. 1

First-Line Treatment Options

Initial Approach

  • Once infection is ruled out based on cerebrospinal fluid results and when primary CNS lymphoma or neurosarcoidosis is not a consideration, start acute immunotherapy immediately 1
  • High-dose corticosteroids (intravenous methylprednisolone) are the most commonly used first-line therapy, selected by 84% of experts for general autoimmune encephalitis presentations 1
  • Standard dosing for methylprednisolone is 1-2 mg/kg/day, with consideration of pulse dosing at 1g daily for 3-5 days in severe cases 1
  • If corticosteroids are contraindicated or ineffective, proceed with IVIG or PLEX 2

IVIG vs. PLEX Selection

  • IVIG is preferred for patients who are agitated or combative, have bleeding disorders, or have difficulty with central line placement 2, 1
  • IVIG is typically administered at 0.4 g/kg/day for 5 days (total dose 2 g/kg) 2
  • PLEX is preferred for patients with severe hyponatremia, high thromboembolic risk, or associated brain/spinal demyelination 2, 1
  • PLEX typically involves 5-10 sessions performed every other day 2, 1
  • A small retrospective study showed better outcomes in NMDAR-antibody encephalitis when both corticosteroids and PLEX were used compared to corticosteroids alone 1

Combination First-Line Therapy

  • For severe initial presentations (e.g., NMDAR-antibody encephalitis, new-onset refractory status epilepticus, severe dysautonomia), consider combination therapy with steroids plus IVIG or steroids plus PLEX from the beginning 1, 2
  • In the AEACN survey, combination therapy was selected by 28% of responders for NMDAR-antibody encephalitis and 19% for unspecified autoimmune encephalitis 1
  • More commonly, combination therapy is done sequentially if there is no meaningful response to the initial agent 1

Second-Line Treatment

When to Escalate Therapy

  • If there is no meaningful clinical or radiological response to optimized first-line therapy after 2-4 weeks, add a second-line agent 1
  • In a survey of experts, 32% indicated adding a second-line agent if there was no response to one first-line agent, while 50% would add a second-line agent only after failure of more than one first-line agent 1
  • Early treatment and escalation to second-line therapy in refractory cases improves outcomes 3

Second-Line Agent Selection

  • Rituximab is the preferred second-line agent for antibody-mediated autoimmune encephalitis (e.g., NMDAR-antibody encephalitis), chosen by 80% of experts in cases with unknown antibodies 1
  • Cyclophosphamide should be considered for cell-mediated autoimmunity (e.g., classical paraneoplastic syndromes) 1
  • Both rituximab and cyclophosphamide have shown good results as second-line agents for rescue therapy in autoimmune encephalitis 1
  • Rituximab is generally less toxic than cyclophosphamide and therefore preferred by most clinicians, although it may not be as effective for cell-mediated inflammation 1

Refractory Cases and Third-Line Options

  • If no clear objective or subjective evidence of improvement with conventional second-line therapies, consider novel approaches 1, 4
  • Potential third-line options include:
    • Tocilizumab (IL-6 inhibitor) 1, 4, 3
    • Bortezomib (proteasome inhibitor) 1, 4, 3
    • Interleukin-2/basiliximab 4
    • Anakinra 4
    • Tofacitinib 4
    • Intrathecal methotrexate 4, 5
    • Natalizumab 4
  • Evidence for these agents is mostly based on case reports or small case series 4, 5

Bridging and Maintenance Therapy

  • After acute treatment, start bridging therapy with one of the following 1:
    • Gradual oral prednisone taper
    • Monthly IVIG
    • Monthly intravenous methylprednisolone
  • Early aggressive treatment is associated with better functional outcomes and fewer relapses 6, 7

Special Considerations

  • For immune checkpoint inhibitor-related autoimmune encephalitis, permanently discontinue the checkpoint inhibitor 1
  • For encephalitis with positive autoimmune encephalopathy or paraneoplastic antibody and limited improvement, consider rituximab or plasmapheresis in consultation with neurology 1
  • When present, associated tumors should be removed as part of the treatment approach 7
  • Patients given immune therapy do better and relapse less than patients given no treatment 7

Treatment Algorithm

  1. Rule out infection and other etiologies
  2. Start first-line therapy:
    • High-dose corticosteroids (IV methylprednisolone 1-2 mg/kg/day or pulse 1g daily for 3-5 days)
    • If contraindicated or ineffective, use IVIG (2 g/kg over 5 days) or PLEX (5-10 sessions)
    • For severe presentations, consider combination therapy
  3. If no improvement after 2-4 weeks of optimized first-line therapy:
    • Add rituximab for antibody-mediated disease
    • Add cyclophosphamide for cell-mediated disease
  4. For refractory cases, consider third-line options like tocilizumab or bortezomib
  5. Implement bridging therapy with oral prednisone taper, monthly IVIG, or monthly IV methylprednisolone 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Treatment of Autoimmune Encephalitis with IVIG or PLEX

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

An Update on the Treatment of Pediatric Autoimmune Encephalitis.

Current treatment options in rheumatology, 2018

Research

Immunotherapy for Refractory Autoimmune Encephalitis.

Frontiers in immunology, 2021

Research

Treatment strategies for autoimmune encephalitis.

Therapeutic advances in neurological disorders, 2018

Research

Immune therapy in autoimmune encephalitis: a systematic review.

Expert review of neurotherapeutics, 2015

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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