Is it safe to use Flagyl (metronidazole) during pregnancy?

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Last updated: October 19, 2025View editorial policy

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Metronidazole (Flagyl) Use During Pregnancy

Metronidazole can be safely used during pregnancy when clinically indicated, as it is not associated with increased risk of congenital malformations, premature births, stillbirths, spontaneous abortions, or low birth weight. 1

Safety Profile

  • Metronidazole crosses the placental barrier rapidly but has not shown evidence of harm to the fetus in reproductive studies 2
  • The FDA classifies metronidazole as a pregnancy category B drug, indicating no evidence of risk in humans 2
  • Current guidelines support the use of metronidazole for specific indications during pregnancy, including trichomoniasis, bacterial vaginosis, and certain gastrointestinal infections 1
  • A study of 597 pregnant women treated with standard courses of oral metronidazole for trichomoniasis showed no increased incidence of low birth weight, stillbirths, or congenital abnormalities compared to untreated women 3

Specific Indications

  • For trichomoniasis during pregnancy, the CDC recommends a single 2g dose of metronidazole 1
  • For bacterial vaginosis in high-risk pregnant women (those with previous preterm delivery), treatment is recommended in the early second trimester 1
  • For inflammatory bowel disease complications such as pouchitis, perianal Crohn's disease, or intra-abdominal abscesses, metronidazole can be safely administered during pregnancy 1

Timing Considerations

  • While metronidazole is generally considered safe throughout pregnancy, some clinicians prefer to avoid its use in the first trimester when possible, though evidence does not indicate teratogenicity 2, 4
  • The pharmacokinetic profile of metronidazole does not significantly change at different stages of pregnancy, so dosing adjustments based on pregnancy stage are not necessary 5

Important Precautions

  • Patients should be advised to avoid alcohol during treatment with metronidazole and for 24 hours afterward due to potential disulfiram-like reactions 6
  • For patients with documented allergy to metronidazole, desensitization under medical supervision is recommended as the first-line approach 7
  • Metronidazole gel is not recommended for trichomoniasis treatment during pregnancy as it achieves cure rates of less than 50% compared to 90-95% with oral therapy 7, 6

Special Considerations

  • Treatment of sexual partners is essential to prevent reinfection when treating sexually transmitted infections 7
  • Some studies suggest that metronidazole used alone during the second trimester in high-risk populations may be associated with preterm delivery, so combination therapy with macrolides or clindamycin might be considered in these cases 8
  • Metronidazole is secreted in breast milk in concentrations similar to those in plasma, but recent evidence suggests it is safe during breastfeeding 2, 4

In conclusion, the benefits of treating specific infections with metronidazole during pregnancy generally outweigh the theoretical risks, particularly when considering the potential complications of untreated infections on pregnancy outcomes.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Metronidazole treatment in pregnancy.

International journal of gynaecology and obstetrics: the official organ of the International Federation of Gynaecology and Obstetrics, 1978

Research

Can we use metronidazole during pregnancy and breastfeeding? Putting an end to the controversy.

Canadian family physician Medecin de famille canadien, 2000

Research

Pharmacokinetics of metronidazole in pregnant patients with bacterial vaginosis.

The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians, 2011

Guideline

Metronidazole Vaginal Gel Side Effects and Alternatives

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Treatment of Vaginal Trichomoniasis in Patients Allergic to Metronidazole

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

The effect of second-trimester antibiotic therapy on the rate of preterm birth.

Journal of obstetrics and gynaecology Canada : JOGC = Journal d'obstetrique et gynecologie du Canada : JOGC, 2007

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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