What to do about fatigue and a feeling of floatiness after starting allicin and rifaximin (Xifaxan) for Small Intestine Bacterial Overgrowth (SIBO)?

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Last updated: October 24, 2025View editorial policy

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Managing Fatigue and Floatiness After Starting Allicin and Rifaximin for SIBO

Fatigue and floatiness after starting rifaximin and allicin for SIBO are likely side effects of the medication, particularly rifaximin, and should be monitored but generally do not require discontinuation of treatment.

Understanding the Side Effects

  • Fatigue is a documented side effect of rifaximin (Xifaxan), occurring in approximately 12% of patients in clinical trials, which is only slightly higher than the 11% reported with placebo 1
  • Dizziness (which may be experienced as "floatiness") is also a known side effect, occurring in about 13% of rifaximin-treated patients compared to 8% in placebo groups 1
  • These symptoms may also represent a "die-off" reaction as bacteria are killed by the antibiotics, releasing endotoxins that can temporarily worsen symptoms 2

Management Recommendations

Continue Treatment If Tolerable

  • If symptoms are mild to moderate, continue the prescribed course of rifaximin as the complete eradication of SIBO requires the full treatment duration (typically 1-2 weeks) 2
  • Rifaximin 550 mg twice daily for 1-2 weeks is the most effective treatment for SIBO with efficacy rates of 60-80% in confirmed cases 2
  • Premature discontinuation may lead to incomplete eradication and symptom recurrence 3

Supportive Measures During Treatment

  • Stay well hydrated to help minimize fatigue and dizziness 3
  • Consider taking rifaximin with food if not otherwise specified, which may help reduce side effects 1
  • Temporary reduction in physical activity during treatment may be helpful if fatigue is significant 3
  • Avoid driving or operating machinery if experiencing significant dizziness or "floatiness" 1

When to Contact Healthcare Provider

  • If symptoms are severe or intolerable, contact your healthcare provider immediately 1
  • Seek immediate medical attention for signs of hypersensitivity reactions including rash, swelling of face/tongue, or difficulty swallowing 1
  • If symptoms persist beyond the treatment course, follow-up evaluation may be needed 2

Alternative Approaches

  • If rifaximin is not tolerated, alternative antibiotics can be considered, including doxycycline, ciprofloxacin, or amoxicillin-clavulanic acid 2
  • For patients with severe side effects, a lower dose or different antibiotic regimen may be necessary 3
  • Rotating antibiotics with 1-2 week periods without antibiotics can be effective for managing chronic or recurrent SIBO 3

Potential Complications to Consider

  • Persistent symptoms after treatment may indicate resistant organisms, incomplete eradication, or presence of other gastrointestinal disorders 2, 4
  • Intolerances to other medications or foods may develop during SIBO treatment and contribute to symptoms 2
  • Consider the possibility of Clostridioides difficile infection, especially with prolonged antibiotic use 1, 3

Long-term Considerations

  • If symptoms persist after completing treatment, follow-up testing may be needed to confirm SIBO eradication 3
  • For recurrent SIBO, consider factors that may predispose to bacterial overgrowth and address underlying causes 2
  • In patients with persistent symptoms after successful SIBO treatment, consider other conditions such as bile acid diarrhea or pancreatic exocrine insufficiency 3

Remember that while these side effects can be uncomfortable, they are generally temporary and the benefits of treating SIBO typically outweigh the short-term discomfort of treatment side effects.

References

Guideline

Tratamiento del Síndrome de Sobrecrecimiento Bacteriano Intestinal (SIBO)

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Concurrent Treatment of Hookworm and Small Intestinal Bacterial Overgrowth

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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