What causes low levels of Secretory Immunoglobulin A (SIgA) in stool?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: October 25, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Causes of Low Secretory Immunoglobulin A (SIgA) in Stool

Low secretory IgA (SIgA) in stool is primarily caused by Selective IgA Deficiency (SIGAD), medication effects, or as an early manifestation of other immunodeficiencies, with significant implications for gastrointestinal health and immune function. 1

Primary Causes

  • Selective IgA Deficiency (SIGAD): Defined as serum IgA level <7 mg/dL with normal IgG and IgM levels in patients older than 4 years, this is the most common primary immunodeficiency affecting approximately 1 in 300-700 white individuals in the United States 1, 2
  • Genetic factors: 20-25% of SIGAD patients have a family history of either SIGAD or Common Variable Immunodeficiency (CVID), suggesting genetic predisposition 2
  • Defective B cell differentiation: SIGAD results from impaired terminal lymphocyte differentiation leading to underproduction of serum and mucosal IgA despite normal IgA genes 3

Secondary/Acquired Causes

  • Medication-induced: Several medications can cause reversible IgA deficiency with subsequent low SIgA in stool 1:

    • Antiepileptics (phenytoin, carbamazepine, valproic acid, zonisamide) 2
    • Anti-inflammatory drugs (NSAIDs, sulfasalazine) 2
    • Immunomodulators (hydroxychloroquine, gold, penicillamine) 2
    • Antibiotics (can disrupt microbiome which influences IgA levels) 4
  • Early manifestation of other immunodeficiencies:

    • Common Variable Immunodeficiency (CVID) - some patients with SIGAD develop CVID later in life 2, 1
    • IgG subclass deficiencies 1
    • Good syndrome (thymoma with immunodeficiency) 2
  • Gastrointestinal disorders:

    • Celiac disease - strongly associated with IgA deficiency 1, 3
    • Inflammatory bowel conditions 5
    • Chronic infections, particularly with Giardia lamblia 1, 4
  • Gut dysbiosis: Patients with low SIgA demonstrate gut microbiome imbalances with enriched proinflammatory bacterial phyla 5

Clinical Implications

  • Increased infection risk: Patients with low SIgA in stool have higher rates of:

    • Gastrointestinal infections, particularly with Giardia lamblia 1, 4
    • Respiratory tract infections 4
    • Viral gastrointestinal infections - patients with low serum and secretory IgA show increased prevalence of GI viruses 6
  • Autoimmune disease associations:

    • Celiac disease (most common association) 3
    • Thyroid disorders 1, 4
    • Type 1 diabetes 1, 4
    • Systemic lupus erythematosus 4
  • Mucosal inflammation: Virus-positive patients with antibody deficiencies show signs of mucosal inflammation with elevated fecal calprotectin levels 6

Diagnostic Approach

  1. Measure total serum IgA to determine if SIGAD is present (defined as <7 mg/dL) 1, 2
  2. Investigate medication history to identify potential reversible causes 2
  3. Screen for celiac disease using IgG-based tests if IgA deficiency is confirmed (standard IgA-based tests will be falsely negative) 2, 1
  4. Evaluate for other immunodeficiencies if clinically indicated, particularly if recurrent infections are present 1
  5. Consider stool testing for pathogens, particularly Giardia lamblia 4

Management Considerations

  • Address reversible causes: Discontinue medications that may cause IgA deficiency if clinically appropriate 2
  • Infection management: Consider aggressive antimicrobial therapy or prophylaxis for patients with recurrent infections 2
  • Monitor for complications: Regular follow-up for patients with confirmed low SIgA to detect infections, autoimmune conditions, and malignancy 2, 1
  • Treat associated conditions: Aggressively manage atopic disease if present 2
  • Blood transfusion precautions: Some IgA-deficient individuals have anti-IgA antibodies that can cause severe transfusion reactions (though rare) 3

References

Guideline

Low Secretory Immunoglobulin A (SIgA) in Stool: Causes and Clinical Implications

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

The clinical significance of immunoglobulin A deficiency.

Annals of clinical biochemistry, 2007

Research

The clinical implications of selective IgA deficiency.

Journal of translational autoimmunity, 2019

Research

Selective Immunoglobulin A Deficiency and the Microbiome.

Critical reviews in immunology, 2021

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.