What autoimmune diseases are associated with low Secretory Immunoglobulin A (SIGA) levels in stool?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: November 5, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Low Secretory IgA in Stool and Associated Autoimmune Diseases

Low secretory IgA (SIgA) in stool is most commonly associated with Selective IgA Deficiency (SIGAD), which carries increased risk for celiac disease, systemic lupus erythematosus, thyroid disorders (both hyper- and hypothyroidism), type 1 diabetes, inflammatory bowel disease (Crohn's disease and ulcerative colitis), and rheumatoid arthritis. 1, 2

Primary Immunodeficiency as the Root Cause

The most important clinical consideration is that low SIgA in stool typically reflects Selective IgA Deficiency (SIGAD), defined as serum IgA <7 mg/dL with normal IgG and IgM levels in patients older than 4 years. 3, 1 This is the most common primary immunodeficiency, affecting approximately 1 in 300-700 white individuals in the United States. 3, 1

Autoimmune Diseases with Strong Associations

High-Risk Autoimmune Conditions

  • Celiac disease has one of the strongest associations with low SIgA, and testing for celiac disease should be considered in all patients with confirmed IgA deficiency. 1, 2

  • Thyroid disorders including both hyperthyroidism and hypothyroidism show significant associations with SIGAD. 4, 2

  • Type 1 diabetes mellitus demonstrates a well-established increased prevalence in patients with IgA deficiency. 4, 2

  • Systemic lupus erythematosus has strong data supporting an association with SIGAD. 4, 2

  • Inflammatory bowel disease, including both Crohn's disease and ulcerative colitis, shows significant associations with low SIgA. 2, 5

  • Rheumatoid arthritis and juvenile idiopathic arthritis have documented increased prevalence in SIGAD patients. 2

Moderate-Risk Autoimmune Conditions

  • Ankylosing spondylitis and vitiligo have strong supporting data for association with SIGAD. 2

  • Autoimmune hepatitis, immune thrombocytopenic purpura, autoimmune hemolytic anemia, and scleroderma show weaker but documented associations. 2

Critical Diagnostic Approach

Initial Evaluation

  • Measure total serum IgA levels as the first step when evaluating low SIgA in stool, as this distinguishes true SIGAD from other conditions. 1, 4

  • Review medication history thoroughly because several drugs can cause reversible IgA deficiency, including phenytoin, carbamazepine, valproic acid, zonisamide, sulfasalazine, gold, penicillamine, hydroxychloroquine, and NSAIDs. 3, 1

  • Screen for celiac disease given the high association, particularly if gastrointestinal symptoms are present. 1

Distinguishing SIGAD from Other Conditions

  • Rule out Common Variable Immunodeficiency (CVID), as some patients with SIGAD progress to CVID later in life (up to 9% in some studies). 3, 1

  • Consider IgG subclass deficiencies (particularly IgG2 or IgG4 deficiency) or specific antibody deficiency, which can present with low IgA. 1, 4

  • Evaluate for Good syndrome (hypogammaglobulinemia with thymoma) in adults with new-onset hypogammaglobulinemia, which requires chest CT for diagnosis. 3

Clinical Monitoring and Management

Long-Term Surveillance

  • Monitor patients with SIGAD over time for development of complications including respiratory and gastrointestinal infections, atopy, autoimmune diseases, celiac disease, and malignancy. 3, 1

  • Screen for specific autoimmune conditions based on clinical presentation, with particular attention to the high-risk conditions listed above. 1, 2

Infection Risk Management

  • Patients with low SIgA are at increased risk for gastrointestinal infections, particularly Giardia lamblia, and respiratory infections. 1, 4

  • Consider aggressive antimicrobial therapy or prophylaxis for patients with recurrent sinopulmonary infections. 3, 1

  • Treat atopic disease aggressively if present, as allergic inflammation can predispose to respiratory tract infections. 3, 1

Important Clinical Pitfalls

  • Do not diagnose SIGAD if serum IgA is >7 mg/dL but below normal range, as there are no consistently identified clinical associations in this group. 3

  • Be aware of transfusion risk: Patients with complete IgA deficiency may develop anti-IgA IgE antibodies, creating risk for anaphylaxis with blood products containing IgA. 3, 4

  • Discontinue causative medications when drug-induced IgA deficiency is identified, as this is often reversible. 3, 1

  • Monitor for progression to CVID, particularly if patients develop late-onset opportunistic infections, gastrointestinal disease, splenomegaly, lymphomas, or granulomas. 3

References

Guideline

Low Secretory Immunoglobulin A (SIgA) in Stool: Causes and Clinical Implications

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

The clinical implications of selective IgA deficiency.

Journal of translational autoimmunity, 2019

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.