Do omega-3 (polyunsaturated fatty acids) supplements impact the gut microbiome?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: March 28, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

From the Guidelines

Omega-3 supplements have a positive impact on the gut microbiome, as evidenced by their ability to increase beneficial bacteria and mitigate harmful ones, with studies suggesting a causal role in improved gut health 1. The effects of omega-3 supplements on the gut microbiome are thought to be mediated by their anti-inflammatory properties and ability to modify the gut environment, promoting the growth of beneficial microbes that produce short-chain fatty acids important for gut health. Key findings from recent studies include:

  • Omega-3 fatty acids found in fatty fish and other dietary sources have been proposed as candidate prebiotics, as they are utilized by specific gut microbes 1.
  • A fish-derived omega-3 supplement increased Coprococcus spp. abundance, which negatively correlated with triglyceride-rich lipoprotein levels 1.
  • Experiments in mice demonstrated that fish oil lowered Toll-like receptor activation and white adipose tissue inflammation, which has been linked to improved insulin sensitivity 1. When considering omega-3 supplementation for gut health, it is essential to choose high-quality supplements that specify EPA and DHA content, take them with meals to improve absorption, and maintain consistent daily use. Typical supplementation ranges from 1-3 grams daily of combined EPA and DHA, with effects potentially becoming noticeable after several weeks of consistent use. While omega-3 supplements can complement your gut health regimen, they work best alongside a diverse, fiber-rich diet that naturally supports microbiome health.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.