Diagnostic Approach for Hypophosphatasia (HPP)
Suspect HPP in any patient with persistently low serum alkaline phosphatase (ALP) below age-specific reference ranges, particularly when accompanied by fractures, bone pain, dental abnormalities, or skeletal deformities, and confirm diagnosis through genetic testing for ALPL gene variants. 1, 2
Clinical Presentation by Age Group
Children and Adolescents
- Look for rickets-like skeletal changes, impaired growth velocity, skeletal deformities, premature loss of deciduous teeth, and dental abscesses 3
- Assess for low-impact fractures, skeletal pain, joint pain, or weakness with family history of similar symptoms 3
- Physical examination should focus on skeletal deformities, dental abnormalities, and growth parameters (height, weight) 3
Adults
- Evaluate for musculoskeletal pain (present in 41% at diagnosis), history of fractures (54% of patients), particularly atypical locations including subtrochanteric femur fractures, metatarsal stress fractures, and hip/femoral neck fractures 4
- Screen for chondrocalcinosis and pyrophosphate arthropathy (more common in women), early osteoarthritis, pseudofractures, and dental abnormalities 4
- Consider HPP in patients with higher than normal or normal lumbar spine bone mineral density (BMD) who present with minimal trauma fractures or non-healing fractures 5
Initial Biochemical Work-Up
Essential Laboratory Tests
- Serum alkaline phosphatase (ALP): The hallmark finding is persistently low ALP below age-specific reference ranges; interpret carefully in adolescents who typically have higher values due to active bone growth 3, 1
- Serum calcium, phosphate, and creatinine 3
- Parathyroid hormone (PTH) to exclude secondary causes 3
- 25(OH) vitamin D and 1,25(OH)₂ vitamin D levels to rule out vitamin D deficiency 3
Confirmatory Biomarkers
- Pyridoxal 5'-phosphate (PLP): Elevated in HPP (median 68 μg/L vs normal 5-50 μg/L); all tested patients in one series had elevated levels 4
- Urine phosphoethanolamine (PEA): Elevated in 94% of adult HPP patients 4
- These substrates accumulate due to deficient tissue-nonspecific alkaline phosphatase (TNAP) activity 1
Renal Phosphate Assessment
- Calculate tubular maximum reabsorption of phosphate per glomerular filtration rate (TmP/GFR) to assess renal phosphate handling and exclude other phosphate disorders 3
Radiographic Evaluation
- Obtain radiographs of long bones, spine, and skull to assess for rickets-like changes, osteomalacia, osteopenia, or pseudofractures 3
- Look for characteristic findings including undermineralized bone, fractures in atypical locations, and skeletal deformities 1
- In adults, assess for chondrocalcinosis on joint radiographs 4
Differential Diagnosis Considerations
Key Distinctions
- Exclude X-linked hypophosphatemia (XLH): XLH presents with elevated (not low) ALP, hypophosphatemia with renal phosphate wasting, and non-suppressed FGF23 levels 3
- Rule out osteoporosis: HPP may present with normal or high lumbar spine BMD despite fractures, unlike typical osteoporosis 5
- Exclude vitamin D deficiency and secondary hyperparathyroidism: Check vitamin D and PTH levels 3
Important Clinical Pitfalls
- Do not assume osteoporosis based solely on fracture history; HPP can present with normal or elevated BMD at the lumbar spine 5
- Avoid bisphosphonate therapy in HPP patients, as these drugs are contraindicated and may worsen bone mineralization 1
- Low ALP may be overlooked or dismissed as a laboratory error; persistently low values warrant investigation 2
Genetic Testing for Definitive Diagnosis
- Confirm diagnosis with genetic testing for ALPL gene variants on chromosome 1, which encodes tissue-nonspecific alkaline phosphatase 1, 2, 6
- Genetic testing distinguishes HPP from other bone disorders and guides treatment decisions 2
- HPP demonstrates autosomal recessive or dominant inheritance patterns with variable penetrance and expression 6
- Variants of uncertain significance (VUS) may complicate interpretation; clinical correlation with biochemical and radiographic findings is essential 6
Diagnostic Algorithm Summary
- Screen: Identify persistently low ALP in patients with suggestive clinical features (fractures, bone pain, dental issues)
- Confirm biochemically: Measure PLP and urine PEA (elevated in HPP)
- Exclude alternatives: Check calcium, phosphate, PTH, vitamin D, and TmP/GFR to rule out other metabolic bone diseases
- Image: Obtain skeletal radiographs to assess for characteristic bone changes
- Definitive diagnosis: Perform ALPL genetic testing 1, 2
Special Considerations
- Symptomatic HPP patients typically have lower median minimum ALP and PLP levels with higher median urine PEA compared to asymptomatic individuals 4
- Gender may influence clinical expression, with women more commonly experiencing metatarsal fractures and chondrocalcinosis 4
- Some patients may have persistently low ALP without identifiable ALPL variants, requiring clinical judgment and consideration of other genetic factors 6