What are the clinical features of Fanconi anemia?

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Clinical Features of Fanconi Anemia

Fanconi anemia presents with a triad of DNA damage repair defects, progressive bone marrow failure, and cancer predisposition, though clinical manifestations are highly variable with 25-40% of patients having no physical anomalies at all. 1

Congenital Anomalies (Present in 60-75% of Patients)

The physical abnormalities are heterogeneous and multisystemic: 1

  • Skeletal abnormalities: Short stature, abnormal thumbs or radii, skeletal malformations of the upper limbs 1
  • Skin manifestations: Café au lait spots, abnormal skin pigmentation 1
  • Renal anomalies: Genitourinary malformations 1
  • Cardiac malformations 1
  • Ophthalmic manifestations 1
  • Gonadal anomalies 1
  • Endocrine disorders: Growth hormone deficiency, hypothyroidism, diabetes 1

Critical caveat: Up to one-third of patients have no physical anomalies and are only diagnosed when presenting with cytopenias, making FA a diagnostic challenge. 1

Hematologic Manifestations

Bone marrow failure (BMF) is the dominant clinical feature, developing in more than 95% of patients: 1

  • Timing: BMF presents in childhood in most patients, with approximately 40% developing severe BMF by age 20 years and 50% by age 50 years 1
  • Risk by age 50: 70% develop severe BMF 1
  • Presentation: Progressive cytopenias that may precede any physical findings 1

Important clinical pearl: The absence of BMF does not exclude the diagnosis of FA, and malignancy can precede the diagnosis of BMF. 1

Malignancy Risk

Patients face dramatically elevated cancer risks across multiple organ systems: 1

Hematologic Malignancies

  • Acute myeloid leukemia (AML): Most common hematologic malignancy, accounting for more than 80% of leukemias 1
  • Cumulative incidence by age 50: Approximately 50% for MDS, 10% for leukemia 1
  • Pediatric cancer: 11% of patients develop cancer at pediatric age 1

Solid Tumors

  • Head and neck squamous cell carcinoma (HNSCC): Most common solid tumor with a relative risk of approximately 600 compared to the general population, usually presenting in adulthood 1
  • Cumulative incidence by age 50: 20-30% for solid tumors 1
  • Post-transplant risk: Risk of developing solid tumors is higher in patients who receive hematopoietic cell transplantation 1

Genotype-Specific Phenotypes

Patients with biallelic mutations in FANCD1/BRCA2 have the most severe phenotype: 1

  • Severe congenital anomalies 1
  • Cumulative incidence of leukemia: 80% by 10 years of age 1
  • Cumulative incidence of any malignancy: More than 90% by 7 years of age 1
  • High risk of brain tumors (medulloblastoma and others), particularly before age 6 years 1
  • Wilms tumor risk 1

FANCN/PALB2 mutations are also associated with high risk of brain tumors before age 6 years and Wilms tumor. 1

FANCS/BRCA1 mutations show high risk of pediatric tumors from very early age, with 4 of 10 patients developing tumors under age 6 years including brain tumors, neuroblastoma, and leukemia. 1

Diagnostic Considerations

Phenotypic heterogeneity is the hallmark: Clinical manifestations vary widely from patient to patient, likely due to modifier genes, environment, and chance effects. 2 The diagnosis requires high clinical suspicion, particularly in patients presenting with isolated cytopenias without obvious congenital anomalies. 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Current clinical management of Fanconi anemia.

Expert review of hematology, 2012

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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