What is the treatment for yeast in urine?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: November 10, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Treatment of Yeast in Urine

For asymptomatic candiduria, treatment is generally not recommended unless the patient is at high risk for dissemination (neutropenic, neonate with low birth weight, or undergoing urologic procedures). 1 For symptomatic candiduria, fluconazole 200 mg (3 mg/kg) daily for 2 weeks is the first-line treatment. 1, 2

Clinical Decision Algorithm

Step 1: Determine if Treatment is Needed

Asymptomatic candiduria (no urinary symptoms):

  • Do NOT treat in most patients—observation alone is appropriate 1, 3
  • Removing predisposing factors (especially indwelling catheters) clears candiduria in approximately 50% of cases without antifungal therapy 1, 4

High-risk patients requiring treatment even when asymptomatic: 1, 3

  • Neutropenic patients (treat as disseminated candidiasis)
  • Neonates with low birth weight (treat as disseminated candidiasis)
  • Patients undergoing urologic procedures (fluconazole 200-400 mg daily or amphotericin B deoxycholate 0.3-0.6 mg/kg daily for several days before and after the procedure)

Symptomatic candiduria (dysuria, frequency, urgency):

  • Always treat 1, 2

Step 2: Identify the Clinical Syndrome

Symptomatic cystitis (lower urinary tract symptoms): 1

  • Fluconazole 200 mg (3 mg/kg) daily for 2 weeks for fluconazole-susceptible species
  • Alternative for fluconazole-resistant organisms: Amphotericin B deoxycholate 0.3-0.6 mg/kg daily for 1-7 days OR flucytosine 25 mg/kg four times daily for 7-10 days

Pyelonephritis (flank pain, fever, upper tract symptoms): 1

  • Fluconazole 200-400 mg (3-6 mg/kg) daily for 2 weeks for susceptible organisms
  • Alternative for resistant strains: Amphotericin B deoxycholate 0.5-0.7 mg/kg daily with or without flucytosine 25 mg/kg four times daily for 2 weeks
  • If disseminated candidiasis is suspected, treat as candidemia 1

Fungus balls (urinary obstruction, imaging findings): 1

  • Surgical removal is strongly recommended in non-neonates
  • Adjunctive systemic therapy: Fluconazole 200-400 mg (3-6 mg/kg) daily OR amphotericin B deoxycholate 0.5-0.7 mg/kg daily with or without flucytosine
  • Local irrigation with amphotericin B (50 mg/L sterile water) may be used as adjunct if access to renal collecting system is available

Step 3: Consider Species and Resistance Patterns

Fluconazole-susceptible species (most C. albicans): 2, 5

  • Fluconazole is the drug of choice, achieving excellent urinary concentrations 6, 4

Fluconazole-resistant species (C. glabrata, C. krusei): 1, 2

  • Amphotericin B deoxycholate 0.3-0.6 mg/kg daily for cystitis OR 0.5-0.7 mg/kg daily for pyelonephritis
  • Flucytosine 25 mg/kg four times daily (requires therapeutic drug monitoring with target levels 40-60 mg/mL) 7
  • Amphotericin B bladder irrigation may be considered for refractory cases 1

Critical Pitfalls to Avoid

Do not use echinocandins or voriconazole for urinary tract infections: 2, 4

  • These agents achieve minimal urinary excretion and are ineffective for Candida UTI

Do not use lipid formulations of amphotericin B for urinary infections: 2

  • They do not achieve adequate urine concentrations; only amphotericin B deoxycholate is appropriate

Do not treat asymptomatic candiduria in low-risk patients: 1, 3, 5

  • This leads to unnecessary antifungal exposure, potential resistance, and adverse effects without clinical benefit

Do not use flucytosine as monotherapy: 7

  • Rapid emergence of resistance occurs; always combine with amphotericin B when using flucytosine

Do not overlook disseminated candidiasis in high-risk patients: 2, 3

  • Neutropenic patients with fever and candiduria require treatment for presumed disseminated disease, not just urinary infection

Treatment Duration

  • Standard duration: 2 weeks for cystitis and pyelonephritis 1, 2
  • Continue treatment until symptoms resolve and urine cultures no longer yield Candida species 1, 2
  • For fungus balls, treat until symptoms resolve and cultures clear 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Treatment of Candiduria with Urinary Frequency

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Management of Budding Yeast on Urinalysis

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Candida urinary tract infections: treatment options.

Expert review of anti-infective therapy, 2007

Research

Candida urinary tract infections in adults.

World journal of urology, 2020

Guideline

Flucytosine Coverage Against Candida auris

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.