What are the diagnostic steps and treatment for celiac disease?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: November 16, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Diagnosing Celiac Disease

Initial Serological Testing

Begin with IgA tissue transglutaminase antibody (tTG-IgA) testing while the patient is actively consuming gluten—this is the single most efficient and accurate screening test for celiac disease. 1, 2

  • The tTG-IgA test has excellent diagnostic performance with sensitivity of 90-96% and specificity >95% 1, 2
  • Always measure total IgA levels simultaneously to identify IgA deficiency, which occurs in 1-3% of celiac patients and causes false-negative tTG-IgA results 1, 2
  • Testing must be performed while consuming at least 10g of gluten daily for 6-8 weeks—never start a gluten-free diet before completing diagnostic testing 1, 2

For Patients with IgA Deficiency

  • Use IgG-based tests instead: IgG deamidated gliadin peptide (DGP-IgG) or IgG tissue transglutaminase (tTG-IgG) 1, 2
  • IgG tests are markedly less accurate in patients with normal IgA levels and should not be used in that setting 3

Special Pediatric Considerations

  • In children under 2 years, combine tTG-IgA with IgG and IgA deamidated gliadin peptides to improve sensitivity 3, 2

Confirmatory Serological Testing

  • If tTG-IgA is >10× the upper limit of normal, perform IgA endomysial antibody (EMA-IgA) testing as confirmation with excellent specificity of 99.6% 1, 2
  • The combination of tTG-IgA >10× upper limit plus positive EMA-IgA approaches 100% positive predictive value for celiac disease 1

Intestinal Biopsy: The Gold Standard

Upper endoscopy with small bowel biopsy remains mandatory for diagnosis in adults, regardless of antibody levels. 1, 2

Biopsy Technique

  • Obtain multiple specimens—ideally 6 biopsies total: 1-2 from the duodenal bulb and at least 4 from the second part of the duodenum or beyond 3, 1
  • Mucosal changes can be patchy, and Brunner's glands in the bulb can interfere with interpretation if only bulb biopsies are taken 3
  • Visual endoscopic appearance alone is insufficient—villous atrophy may not be visible, so biopsies must be obtained even if mucosa appears normal 3

Diagnostic Histologic Findings

  • Characteristic features include villous atrophy, crypt lengthening with increased lamina propria, and increased intraepithelial lymphocytes 3, 1
  • Lymphocytic infiltration alone without villous atrophy is NOT diagnostic of celiac disease—consider other causes like H. pylori infection, bacterial overgrowth, or autoimmune disorders 3, 2

Pediatric Biopsy-Avoidance Strategy

  • In children with tTG-IgA ≥10× upper limit of normal, positive EMA-IgA, AND positive HLA-DQ2/DQ8, biopsy may be avoided per pediatric guidelines 1, 2
  • This strategy does NOT apply to adults 1

HLA Genetic Testing

  • HLA-DQ2 and HLA-DQ8 testing has >99% negative predictive value—absence of both alleles essentially rules out celiac disease 3, 1, 2
  • Do NOT use HLA testing for routine diagnosis—25-30% of the general white population carries HLA-DQ2, making it a poor positive predictor 3

When HLA Testing Is Useful

  • When celiac disease is strongly suspected despite negative serology 3, 1
  • In patients with equivocal biopsy findings 3, 2
  • In patients already on a gluten-free diet who were never properly tested 3, 2
  • In patients with discrepant serology and histology results 3, 2
  • In Down syndrome patients where testing is recommended 3, 1

Diagnostic Algorithm for Specific Scenarios

Negative Serology but High Clinical Suspicion

  1. Confirm patient is consuming adequate gluten (at least 10g daily for 6-8 weeks) 1, 2
  2. Verify total IgA level is normal 1, 2
  3. Perform HLA-DQ2/DQ8 testing—if positive, proceed to biopsy 3, 1
  4. If HLA negative, celiac disease is effectively ruled out 1, 2

Patient Already on Gluten-Free Diet

  • Resume normal diet with three slices of wheat bread daily for 1-3 months before repeat testing 1
  • Some patients may require several years of gluten challenge for histologic relapse to occur 3
  • A 4-week challenge with sufficient gluten to reproduce symptoms is adequate in most cases 3

Discordant Results (Positive tTG-IgA, Negative EMA)

  • Proceed directly to upper endoscopy with biopsy—this may represent early or developing celiac disease 4
  • Do not rely on serology alone when results are discordant 3, 4

High-Risk Groups Requiring Testing

Screen the following populations even without symptoms:

  • First-degree relatives of celiac patients 1, 5
  • Type 1 diabetes mellitus 1, 5
  • Autoimmune thyroid disease (Hashimoto's or Graves') 1, 5
  • Unexplained iron deficiency anemia 1, 5
  • Premature osteoporosis 1
  • Unexplained liver transaminase elevations 1, 5
  • Down syndrome, Turner syndrome, Williams syndrome 1, 5
  • Autoimmune hepatitis or primary biliary cholangitis 5
  • Sjögren's syndrome 5
  • Dermatitis herpetiformis 6, 5
  • Unexplained ataxia or peripheral neuropathy 5

Treatment Approach

Initiate a strict, lifelong gluten-free diet immediately after biopsy confirmation—this is the only effective treatment. 1, 7

  • Refer to a registered dietitian experienced in celiac disease management 1
  • Follow-up serology at 6 months, 12 months, then yearly thereafter 1, 2
  • Negative serology after treatment does NOT guarantee mucosal healing—persistently positive antibodies indicate ongoing gluten exposure 1, 2
  • For persistent or relapsing symptoms despite negative serology, perform repeat endoscopic biopsies to assess mucosal healing 1

Critical Pitfalls to Avoid

  • Never initiate a gluten-free diet before completing diagnostic workup—this leads to false-negative serology and inconclusive biopsies 1, 2
  • Do not rely solely on symptom improvement with gluten avoidance—this has very low positive predictive value for celiac disease 3, 2
  • Do not use IgG antigliadin antibodies for primary detection—these are no longer recommended 3
  • Do not skip biopsy in adults based on high antibody levels alone—biopsy remains mandatory for differential diagnosis 1, 7
  • Do not assume normal-appearing mucosa on endoscopy rules out celiac disease—always obtain biopsies 3

References

Guideline

Celiac Disease Diagnosis and Management

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Celiac Disease Diagnostic Guidelines

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Evaluating Discordant Celiac Disease Test Results

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.