What is the initial workup for a patient suspected of having Inflammatory Bowel Disease (IBD)?

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Last updated: November 29, 2025View editorial policy

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Initial Workup for Suspected Inflammatory Bowel Disease

For patients aged 16-40 with chronic lower gastrointestinal symptoms lasting >4 weeks, begin with faecal calprotectin testing alongside basic laboratory investigations, followed by urgent gastroenterology referral and ileocolonoscopy if calprotectin is >250 μg/g. 1

Primary Care Assessment and Initial Testing

History Taking

Obtain a detailed history focusing on:

  • Stool characteristics: frequency, consistency, urgency, and presence of rectal bleeding 1
  • Systemic symptoms: abdominal pain, malaise, fever, and weight loss (document objective weight loss) 1
  • Red flag features: rectal bleeding plus any combination of abdominal pain, change in bowel habit, weight loss, or iron deficiency anemia 1
  • Recent travel and medication use (particularly NSAIDs, which can elevate calprotectin) 1
  • Smoking status and family history of IBD or gastrointestinal cancer 1
  • Extraintestinal manifestations: joint symptoms, skin changes, and eye problems 1

Physical Examination

Perform a focused examination documenting:

  • Vital signs: pulse rate, blood pressure, temperature, and weight 1
  • Signs of anemia: pallor suggesting chronic blood loss 1
  • Fluid depletion: assess skin turgor and mucous membranes 1
  • Abdominal examination: tenderness, distension, or palpable masses 1
  • Perianal examination: essential for detecting Crohn's disease-related fistulae or abscesses 1

Mandatory Laboratory Investigations

Order the following tests in primary care:

  • Complete blood count to detect anemia, leukocytosis, or thrombocytosis 1, 2
  • Urea and electrolytes to assess for dehydration and electrolyte imbalances 1
  • C-reactive protein (CRP) as a marker of systemic inflammation 1, 2
  • Coeliac serology to exclude celiac disease as a differential diagnosis 1
  • Stool culture to exclude infectious causes including Clostridium difficile toxin 1

Faecal Calprotectin Testing Strategy

Faecal calprotectin is the single most important screening test, with 93-95% sensitivity and 91-96% specificity for differentiating IBD from non-IBD diagnoses. 1

Interpret results as follows:

  • <100 μg/g: IBS likely, treat as IBS in primary care 1
  • 100-250 μg/g: Consider repeat testing off NSAIDs or routine gastroenterology referral 1
  • >250 μg/g: Refer urgently to gastroenterology after excluding infection 1

Critical caveat: Do not perform calprotectin testing if NSAIDs have been used in the past 6 weeks, as this causes false elevation. 1

Secondary Care Diagnostic Workup

Endoscopic Evaluation

Ileocolonoscopy with terminal ileal intubation and multiple biopsies is the reference standard for IBD diagnosis. 1, 3

For ulcerative colitis diagnosis:

  • Perform colonoscopy or flexible sigmoidoscopy to assess disease extent 1
  • Look for loss of vascular pattern, granularity, friability, and ulceration 1
  • Take biopsies from affected and normal-appearing areas, including the rectum even if macroscopically normal 1, 3
  • In moderate to severe disease, flexible sigmoidoscopy is safer than full colonoscopy due to perforation risk 1

For Crohn's disease diagnosis:

  • Perform colonoscopy to the terminal ileum to document focal, asymmetric inflammation 1
  • Take terminal ileal biopsies even if macroscopically normal to detect microscopic disease 1
  • Obtain biopsies from multiple segments to document skip lesions 1, 3
  • Consider upper endoscopy if upper GI symptoms are present, particularly in pediatric patients 1

Cross-Sectional Imaging

All patients with confirmed or strongly suspected IBD require cross-sectional imaging at diagnosis to assess small bowel involvement and detect complications. 1, 3

  • MR enterography is preferred over CT enterography to avoid radiation exposure in this young patient population 1, 3
  • Imaging is essential for Crohn's disease to define extent and site of disease, particularly small bowel involvement beyond colonoscopic reach 1
  • Plain abdominal radiography is essential in suspected severe IBD to exclude colonic dilatation and assess disease extent 1

Additional Investigations for Specific Scenarios

  • Small bowel capsule endoscopy: Consider if ileocolonoscopy is inconclusive but clinical suspicion remains high 1
  • Balloon-assisted enteroscopy: Reserve for diagnostic evaluation when other modalities are inconclusive or when therapeutic intervention is needed 1
  • Upper GI endoscopy with biopsies: Particularly useful in pediatric patients and adults with upper GI symptoms 1

Common Pitfalls to Avoid

Do not rely on CRP alone: Approximately 15-20% of patients with active IBD have normal CRP levels, particularly in ulcerative colitis. 2, 3 CRP correlates better with endoscopic activity in Crohn's disease than ulcerative colitis. 2

Do not defer colonoscopy based on intermediate calprotectin values (100-250 μg/g) if clinical suspicion is high based on symptoms or family history. 1

Do not perform colonoscopy in severe colitis without experienced endoscopist involvement: There is higher perforation risk in moderate to severe disease; flexible sigmoidoscopy is safer. 1

Do not forget to exclude infection: Always test for C. difficile toxin and other infectious causes before confirming IBD diagnosis. 1, 2

Admit patients urgently if systemically unwell or suspected acute severe colitis rather than pursuing outpatient workup. 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Laboratory Tests for Inflammatory Bowel Disease

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Diagnostic Approach to Inflammatory Bowel Disease

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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