What are the steps to diagnose celiac disease?

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Last updated: December 3, 2025View editorial policy

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How to Test for Celiac Disease

Begin with IgA tissue transglutaminase antibody (tTG-IgA) testing while the patient is on a gluten-containing diet, followed by intestinal biopsy for confirmation in adults. 1, 2

Initial Serologic Testing

  • Order IgA tTG as the single most efficient first-line test, with sensitivity of 90.7% and specificity of 87.4% in adults, and 97.7% sensitivity with 70.2% specificity in children 1, 2
  • Simultaneously measure total IgA levels to rule out IgA deficiency, which occurs in 1-3% of celiac patients and causes falsely negative results 1, 2
  • Ensure the patient is consuming adequate gluten (at least 10g daily for 6-8 weeks) before testing, as gluten restriction causes false-negative results 2, 3

Confirmatory Serologic Testing

  • If tTG-IgA is weakly positive in adults, add IgA endomysial antibody (EMA) testing, which has excellent specificity of 99.6% 1
  • If tTG-IgA is >10× upper limit of normal, perform EMA-IgA as confirmatory testing—this combination approaches 100% positive predictive value 1, 2

Testing in IgA-Deficient Patients

  • Use IgG-based tests if IgA deficiency is confirmed: IgG deamidated gliadin peptide (DGP-IgG) or IgG tTG 1
  • Do not use IgG tests in patients with normal IgA levels, as they are markedly less accurate in this setting 1, 2
  • Avoid IgA/IgG antigliadin antibody tests, as they provide no additional diagnostic benefit and have poor performance compared to tTG and EMA 1

Intestinal Biopsy (Gold Standard)

  • Refer all seropositive adults for upper endoscopy with duodenal biopsy to confirm diagnosis 1
  • Obtain at least 6 biopsy specimens: 1-2 from the duodenal bulb and at least 4 from the second part of the duodenum or beyond, as mucosal changes can be patchy 1, 2
  • Look for characteristic histologic findings: villous atrophy (total or partial), crypt lengthening with increased lamina propria, and increased intraepithelial lymphocytes 1
  • Do not rely on visual endoscopic examination alone, as it is not sufficiently sensitive for detecting celiac disease 1

Biopsy-Avoidance Strategy in Children

  • Children with tTG-IgA ≥10× upper limit of normal, positive EMA-IgA, and positive HLA-DQ2/DQ8 may avoid biopsy according to recent pediatric guidelines 1, 2
  • Adults still require biopsy confirmation despite high antibody levels, though COVID-19 pandemic protocols temporarily allowed non-biopsy diagnosis in select cases 1

HLA Genetic Testing

  • Use HLA-DQ2/DQ8 testing when celiac disease is strongly suspected despite negative serology, as absence of both alleles has >99% negative predictive value and essentially rules out celiac disease 1, 2
  • HLA testing is also useful in patients with equivocal biopsy findings or those already on a gluten-free diet without prior testing 2, 3

Special Testing Considerations in Children Under 2 Years

  • Combine tTG-IgA with IgG and IgA deamidated gliadin peptides to improve sensitivity in this age group 2, 3

Critical Pitfalls to Avoid

  • Never start a gluten-free diet before completing diagnostic testing, as this leads to false-negative serology and inconclusive biopsies 1, 2
  • Do not rely solely on serology without biopsy confirmation in adults, as this can lead to misdiagnosis 1, 3
  • If the patient has already started a gluten-free diet, they must resume normal diet with three slices of wheat bread daily for 1-3 months before repeat testing 2, 3
  • Obtain biopsy specimens promptly after positive serology and instruct patients not to avoid gluten until after specimens are obtained 1

Algorithm for Negative Serology with High Clinical Suspicion

  • Confirm adequate gluten intake (at least 10g daily for 6-8 weeks) 2, 3
  • Verify total IgA level is normal to rule out IgA deficiency 1, 2
  • Perform HLA-DQ2/DQ8 testing—if positive, proceed to biopsy despite negative serology 1, 2
  • Alternatively, proceed directly to upper endoscopy and biopsy if signs and symptoms warrant the procedure 1

High-Risk Groups Requiring Testing

  • First-degree relatives of celiac patients 1, 2
  • Type 1 diabetes mellitus 1, 2
  • Unexplained iron deficiency anemia 1, 2
  • Premature osteoporosis 1, 2
  • Autoimmune thyroid disease 1, 2
  • Down syndrome 1, 2
  • Unexplained elevations in liver transaminases 1, 2

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Celiac Disease Diagnosis and Management

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Celiac Disease Diagnostic Guidelines

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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