What are the most common viruses associated with rhinorrhea in children under 5?

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Last updated: December 4, 2025View editorial policy

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Most Common Viruses Causing Rhinorrhea in Children Under 5

The five most common viruses associated with rhinorrhea in children under 5 years are: (1) Respiratory Syncytial Virus (RSV), (2) Rhinoviruses, (3) Human Coronaviruses (229E, NL63, OC43, HKU1), (4) Parainfluenza viruses, and (5) Human Metapneumovirus.

Primary Viral Pathogens

1. Respiratory Syncytial Virus (RSV)

  • RSV is consistently the most frequently detected pathogen in children under 5 years, representing up to 40% of identified viral pathogens in those younger than 2 years 1
  • RSV infects approximately 90% of children within the first 2 years of life, with initial presentation typically including 2-4 days of upper respiratory symptoms with clear, watery rhinorrhea before potential progression to lower respiratory involvement 2
  • RSV demonstrates clear seasonal patterns with peak incidence between December and March in North America 2
  • The CDC identifies RSV as the most common cause of lower respiratory tract infection in children under 2 years 2

2. Rhinoviruses

  • Rhinoviruses are the second most frequently recovered pathogen, accounting for approximately 12-24% of acute respiratory infections in hospitalized children under 5 years 3, 4
  • In older children (ages 1-2 years), rhinoviruses account for 65% of respiratory infections, and in children ≥3 years, they dominate at 82% 4
  • Rhinoviruses are a major cause of lower respiratory tract infections in hospitalized children ≤3 years old, not just upper respiratory symptoms 3

3. Human Coronaviruses

  • Four endemic human coronaviruses (229E, NL63, OC43, and HKU1) are associated with common cold symptoms including rhinorrhea, congestion, sore throat, sneezing, and cough 5
  • In children, these coronaviruses also cause exacerbation of asthma and otitis media 5
  • These viruses are now commonly detected in commercial respiratory panels using nucleic acid amplification tests 5

4. Parainfluenza Viruses

  • Parainfluenza viruses are a major cause of upper respiratory tract infections in addition to croup, bronchiolitis, and pneumonia 5
  • Parainfluenza virus infections account for up to 11% of all hospitalizations in children <5 years old 5
  • Four antigenically distinct types exist, with types 1 and 2 most commonly associated with croup syndrome, while type 3 is associated with bronchiolitis and pneumonia 5

5. Human Metapneumovirus

  • Human metapneumovirus causes acute respiratory tract disease in people of all ages, with upper respiratory infections including rhinorrhea being common presentations in children 5
  • The virus is associated with bronchiolitis in infants, pneumonia, asthma exacerbations, croup, and upper respiratory infections with concomitant otitis media 5
  • Most commonly, children present with mild to moderate symptoms 5
  • Human metapneumovirus was detected in 4% of all children with acute expiratory wheezing and in 11% of infants 4

Additional Notable Viral Pathogens

  • Enteroviruses account for approximately 25% of acute expiratory wheezing cases in children, particularly in infants where they represent 42% of cases 4
  • Influenza viruses (types A and B) represent approximately 4% of lower respiratory tract infections in hospitalized children under 5 years 6
  • Adenoviruses account for approximately 3.4% of lower respiratory tract infections in this age group 6

Clinical Context and Diagnostic Considerations

  • Multiple pathogen detection is extremely common, with 2-33% of hospitalized children with respiratory infections simultaneously infected by 2 or more viruses 1
  • Viral etiologies have been documented in up to 80% of children younger than 2 years with community-acquired pneumonia 1
  • The clinical presentation of rhinorrhea is indistinguishable between these viral etiologies, making specific viral diagnosis based on symptoms alone impossible 2
  • Routine viral testing is not necessary for typical cases as it does not change management in most clinical scenarios 7

References

Guideline

Multiple Pathogen Detection in Pediatric Respiratory Infections

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Respiratory Syncytial Virus Infection in Children

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Bronchiolitis in Young Children

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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