When are cafe au lait (CAL) spots significant in children?

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Last updated: December 6, 2025View editorial policy

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When Café au Lait Spots Are Significant in Children

Café au lait macules (CALMs) become clinically significant when a child has ≥6 spots measuring ≥5mm in prepubertal children or ≥15mm in postpubertal individuals, as this meets one of the NIH diagnostic criteria for neurofibromatosis type 1 (NF1), a condition associated with 8-15 years reduced life expectancy. 1

Immediate Red Flags Requiring Urgent Evaluation

The following presentations warrant immediate referral to genetics or specialized evaluation:

  • ≥6 CALMs meeting size criteria (≥5mm prepubertal, ≥15mm postpubertal) 1
  • CALMs plus axillary or inguinal freckling (Crowe's sign), which is highly specific for NF1 1
  • CALMs with leukemia diagnosed before age 18, suggesting constitutional mismatch repair deficiency syndrome or CBL syndrome 1
  • CALMs with developmental delays, hypotonia, or neurologic symptoms, raising concern for biallelic mismatch repair deficiency syndrome 2
  • CALMs with dysmorphic facial features, congenital heart defects, or short stature, suggesting RASopathies (Noonan, Costello, or CBL syndromes) 2, 1

Algorithmic Approach to Evaluation

Step 1: Document and Measure

Count and measure every single CALM precisely. The exact number and size determine whether NIH criteria are met. 1 This is not optional—documentation must be meticulous.

Step 2: Complete Physical Examination

Look specifically for:

  • Axillary or inguinal freckling (appears typically ages 4-5 years in NF1) 1
  • Cutaneous or subcutaneous neurofibromas (may not appear until later childhood/adolescence) 1
  • Dysmorphic facial features (widely spaced eyes, ptosis, low-set ears suggest RASopathies) 2
  • Segmental distribution of CALMs (suggests segmental neurofibromatosis or mosaic RASopathy) 3

Step 3: Ophthalmologic Examination

Slit-lamp examination for Lisch nodules (iris hamartomas) is essential, as these are pathognomonic for NF1 and often appear before other diagnostic features. 1, 3

Step 4: Risk Stratification

High-Risk (Refer to Genetics Immediately):

  • ≥6 CALMs meeting size criteria 1
  • Any CALMs plus freckling 1
  • Any CALMs plus Lisch nodules 1
  • Any CALMs plus neurofibromas 1
  • CALMs plus developmental delays or hypotonia 2
  • CALMs plus leukemia or other childhood cancers 1

Intermediate-Risk (Close Follow-up, Consider Genetics Referral):

  • 3-5 CALMs meeting size criteria 3
  • Multiple CALMs with dysmorphic features but no clear syndrome 2
  • Segmental CALMs (may represent segmental NF1 or mosaic conditions) 3

Low-Risk (Routine Follow-up):

  • 1-2 isolated CALMs in otherwise healthy child 2
  • Multiple feathery-bordered CALMs in fair-skinned, red/blond-haired children without other features (often benign variant) 4

Critical Diagnostic Distinctions

Neurofibromatosis Type 1 vs. Legius Syndrome

Legius syndrome mimics NF1 with CALMs and freckling but lacks neurofibromas, optic gliomas, and tumor risks. 2, 1 This distinction is crucial because Legius patients do not require the intensive cancer surveillance needed for NF1. Genetic testing (SPRED1 vs. NF1 gene) definitively distinguishes these conditions. 2, 1

Constitutional Mismatch Repair Deficiency Syndrome

CALMs plus childhood leukemia, brain tumors, or GI malignancies suggest biallelic mismatch repair deficiency syndrome, which carries extremely high cancer risk. 2 These children typically have café au lait spots that may be mistaken for NF1, but the presence of hematologic malignancies or brain tumors in early childhood is the distinguishing feature. 2

RASopathies (Noonan, Costello, CBL Syndromes)

CALMs with congenital heart defects, short stature, cryptorchidism, or characteristic facies suggest RASopathies rather than NF1. 2 Costello syndrome carries 15% cumulative cancer risk by age 20, primarily embryonal rhabdomyosarcoma and neuroblastoma, requiring specific surveillance protocols. 2

Natural History and Follow-Up Timing

Most children with multiple CALMs who will develop NF1 show additional diagnostic features within 3 years of initial evaluation, usually before age 5. 3 The most common confirmatory feature to appear is skin-fold freckling (occurred in 75% of cases in one longitudinal study), followed by Lisch nodules and neurofibromas. 3

Annual follow-up is mandatory for children with multiple CALMs until diagnosis is established or excluded. 1, 3 Each visit must include:

  • Complete skin examination for new freckling or neurofibromas 1
  • Ophthalmologic examination for Lisch nodules 1, 3
  • Developmental and neurologic assessment 1
  • Blood pressure measurement (renovascular hypertension risk in NF1) 1

Common Pitfalls to Avoid

Do not dismiss multiple CALMs in fair-skinned children with feathery borders as automatically benign. While this phenotype may represent a benign variant 4, these children still require initial comprehensive evaluation and at least short-term follow-up to ensure no additional features emerge. 4, 3

Do not confuse isolated CALMs with high-risk cutaneous markers for spinal dysraphism. Isolated CALMs are classified as low-risk for underlying spinal cord malformations, unlike hypertrichosis, infantile hemangiomas, or subcutaneous lipomas overlying the spine. 2 However, this classification applies only to spinal dysraphism risk, not to systemic genetic syndromes.

Do not delay genetics referral waiting for "more features to develop." Any child meeting ≥2 NIH diagnostic criteria for NF1 should be referred immediately, as early diagnosis enables appropriate surveillance for life-threatening complications including malignant peripheral nerve sheath tumors (8.5% risk by age 30,15.8% by age 85). 1

Do not assume normal initial evaluation excludes NF1. Freckling typically appears ages 4-5 years, Lisch nodules may not be present in early childhood, and neurofibromas often don't develop until adolescence. 2, 1, 3 This is why longitudinal follow-up is essential.

When Isolated CALMs Are Truly Insignificant

1-2 isolated CALMs in an otherwise healthy child with normal development, no dysmorphic features, and no family history of genetic syndromes are clinically insignificant. 2, 5 These occur in the general population and do not warrant genetic evaluation or specialized follow-up beyond routine pediatric care. 2, 5

References

Guideline

Management and Evaluation of Significant Café au Lait Spots

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

The diagnostic and clinical significance of café-au-lait macules.

Pediatric clinics of North America, 2010

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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