What autoimmune disease causes diffuse abdominal pain, diarrhea, bloating, and migraines?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Article Review Status
Submitted
Under Review
Approved

Last updated: April 5, 2025 • View editorial policy

Differential Diagnosis for Autoimmune Disease

Single most likely diagnosis

  • Celiac Disease: This autoimmune disorder is triggered by the ingestion of gluten, leading to symptoms such as diffuse abdominal pain, diarrhea, bloating, and potentially migraines due to malabsorption and inflammation. The gastrointestinal symptoms are directly related to the immune response against gluten, while migraines could be associated with the systemic inflammation and nutritional deficiencies that often accompany celiac disease.

Other Likely diagnoses

  • Inflammatory Bowel Disease (IBD): Conditions like Crohn's disease and ulcerative colitis can cause abdominal pain, diarrhea, and bloating due to chronic inflammation of the gastrointestinal tract. While migraines are not a primary symptom, the systemic nature of IBD can lead to extraintestinal manifestations, including headaches.
  • Irritable Bowel Syndrome (IBS): Although not an autoimmune disease per se, IBS can present with similar gastrointestinal symptoms and is often considered in the differential diagnosis for patients with chronic abdominal complaints. Migraines could be coincidental or related to the stress and anxiety that often accompany IBS.
  • Autoimmune Enteropathy: A rare condition characterized by autoimmune-mediated damage to the small intestine, leading to malabsorption and symptoms similar to celiac disease. It could potentially cause migraines through similar mechanisms of malabsorption and systemic inflammation.

Do Not Miss diagnoses

  • Lupus: Systemic lupus erythematosus (SLE) is a multisystem autoimmune disease that can cause a wide range of symptoms, including abdominal pain, diarrhea, and migraines. The gastrointestinal and neurological manifestations can be part of the disease's systemic involvement.
  • Sjögren's Syndrome: Primarily known for causing dry eyes and mouth, Sjögren's can also have extraglandular manifestations, including gastrointestinal symptoms and headaches. It's crucial to consider this diagnosis due to its potential for multi-organ involvement.

Rare diagnoses

  • Eosinophilic Gastroenteritis: A rare condition characterized by the infiltration of eosinophils into the gastrointestinal wall, leading to abdominal pain, diarrhea, and potentially other systemic symptoms like migraines, depending on the extent and location of the inflammation.
  • Whipple's Disease: A rare, systemic bacterial infection that can cause malabsorption, weight loss, abdominal pain, diarrhea, and migraines. Although not an autoimmune disease, its presentation can mimic autoimmune disorders, making it a rare but important consideration in the differential diagnosis.

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.