How to drain a pilonidal cyst using a punch biopsy technique?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: December 9, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Punch Biopsy Technique for Pilonidal Cyst Drainage

The punch biopsy technique (also called biopsy punch excision or BPE) is an effective minimally invasive method for draining and treating pilonidal cysts, using disposable biopsy punches of varying caliber to excise pits in the natal cleft and drain lateral abscesses. 1

Technique Overview

The biopsy punch excision method is a modified version merging the Bascom "pit picking" procedure with the Gips procedure, sometimes referred to as the Bascom-Gips procedure. 1 This approach targets the disease pathophysiology by removing hair-containing pits while draining associated fluid collections.

Punch Selection and Execution

  • For natal cleft pits: Use the smallest caliber biopsy punch possible to excise each individual pit or sinus opening in the midline. 1
  • For lateral abscesses or fluid collections: Use larger caliber punches or even small incisions to adequately drain the cavity. 1
  • The procedure employs biopsy punches of different calibers depending on anatomic location and extent of disease. 1

Operative Considerations

  • Mean operating time is approximately 34 minutes (±24 minutes). 1
  • The technique can be performed under local anesthesia in many cases, making it suitable for outpatient management. 1
  • This is a disease-targeted approach that addresses both the causative hair-containing pits and any associated abscess cavities. 1

Post-Procedure Management

Immediate Wound Care

After punch excision, implement a comprehensive wound care regimen including appropriate debridement, antimicrobial rinsing, and proper dressing to prevent healing disturbances. 2

  • Rinse the wound with an antimicrobial solution. 2
  • Apply appropriate mechanical or autolytic debridement as needed. 2
  • Use primary and secondary dressings to protect the wound. 2
  • Consider topical hemoglobin application to support healing. 2

Recovery Timeline

  • Full recovery occurs after a mean of 21 days (±13 days). 1
  • Return to work, school, or university activities typically occurs after a mean of 4 days (±12 days). 1
  • Complete wound closure for wounds healing by secondary intention averages 76 days, with most achieving closure within 23-98 days. 2

Complications and Management

Early Complications (Within 24 Hours)

  • Early postoperative bleeding occurs in approximately 2.6% of patients. 1
  • Manage with local pressure and hemostatic measures as needed. 1

Delayed Complications (After 24 Hours)

  • Delayed bleeding occurs in approximately 3.1% of patients. 1
  • Postoperative fluid collections (hematoma or seroma) develop in 9.8% of patients within 2 weeks. 1
  • Hematomas occur in approximately 3% of cases, seromas in approximately 7%. 1

Infection Prevention

If acute infection is present preoperatively, eradicate it before definitive treatment to optimize outcomes. 3 While this recommendation comes from older literature on radical excision, the principle of infection control applies to all pilonidal procedures. 3

Recurrence Rates and Experience Effect

Overall Recurrence Data

  • 12-month recurrence rate: 8.1% 1
  • 24-month recurrence rate: 13.0% 1
  • 60-month recurrence rate: 16.4% 1

Critical Learning Curve Consideration

Surgical experience significantly impacts early recurrence rates, with experienced operators achieving 5.1% recurrence at 12 months compared to 12.9% for less experienced surgeons. 1

  • Early experience (first 2 years): 12.9% recurrence at 12 months 1
  • Intermediate experience (years 3-4): 6.7% recurrence at 12 months 1
  • Advanced experience (years 5-6): 5.1% recurrence at 12 months 1
  • At least 5-year follow-up is needed to accurately assess surgical outcomes for pilonidal disease. 1

Advantages Over Alternative Approaches

  • Minimally invasive with lower morbidity compared to wide excision. 1
  • Inexpensive procedure requiring only disposable biopsy punches. 1
  • Disease-targeted approach addressing the causative pathology (hair-containing pits). 1
  • Faster return to normal activities compared to traditional excision methods. 1

Important Caveats

  • This technique is most appropriate for uncomplicated pilonidal disease with identifiable pits and lateral abscesses. 1
  • Recurrent disease after previous failed surgery may require more extensive excision techniques. 4, 3
  • The presence of extensive sinus tracts or complex disease may necessitate alternative surgical approaches. 5
  • Adequate wound care in the postoperative period is essential to prevent healing disturbances that can lead to poor outcomes. 2

References

Research

The impact of experience on recurrence rates after biopsy punch excision for pilonidal disease.

Colorectal disease : the official journal of the Association of Coloproctology of Great Britain and Ireland, 2022

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Pilonidal cyst: cause and treatment.

Diseases of the colon and rectum, 2000

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.