What are the steps for testing and diagnosing celiac disease?

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Celiac Disease Testing and Diagnosis

Initial Screening Test

Begin with IgA tissue transglutaminase antibody (tTG-IgA) plus total IgA level measurement while the patient consumes a gluten-containing diet—this is the preferred first-line approach with sensitivity of 90-96% and specificity exceeding 95%. 1, 2, 3

Critical Pre-Testing Requirements

  • The patient must be consuming at least 10g of gluten daily for 6-8 weeks before testing—starting a gluten-free diet before diagnostic workup causes false-negative results and invalidates the testing. 1, 2, 3
  • If a patient has already started a gluten-free diet, they must resume eating three slices of wheat bread daily for 1-3 months (sometimes requiring several years for histologic relapse) before repeat testing can be performed. 2

Simultaneous Total IgA Measurement

  • Measure total IgA level alongside tTG-IgA to identify IgA deficiency, which occurs in 1-3% of celiac patients and causes false-negative tTG-IgA results. 1, 3
  • Do not routinely measure IgA levels in all patients as a first step unless IgA deficiency is strongly suspected—it is not warranted universally. 4

Confirmatory Serological Testing

When tTG-IgA is elevated, particularly >10× the upper limit of normal, perform IgA endomysial antibody (EMA-IgA) as confirmatory testing with excellent specificity of 99.6%. 1, 2, 3

  • The combination of tTG-IgA >10× upper limit of normal plus positive EMA-IgA approaches 100% positive predictive value for celiac disease. 2, 3

Intestinal Biopsy Confirmation

Upper endoscopy with multiple duodenal biopsies remains the gold standard for diagnosis in adults and must be performed despite high antibody levels. 1, 2, 3

Biopsy Technique

  • Obtain at least 6 biopsy specimens total: 1-2 from the duodenal bulb and at least 4 from the second part of the duodenum or beyond. 1, 2, 3
  • Multiple specimens increase diagnostic accuracy and account for patchy distribution of villous atrophy. 2

Histologic Findings

  • Characteristic findings include villous atrophy, crypt lengthening, and increased intraepithelial lymphocytes. 1, 2
  • Villous atrophy is defined as Marsh 3 lesion or villous height:crypt depth ratio below 3.0. 5

When Biopsy May Be Avoided

  • In children only with tTG-IgA ≥10× upper limit of normal, positive EMA-IgA, and positive HLA-DQ2/DQ8, biopsy may be avoided according to pediatric guidelines. 1, 2
  • Biopsy remains mandatory in adults to establish definitive diagnosis and rule out other causes of villous atrophy. 3

Testing in Special Populations

IgA-Deficient Patients

  • Use IgG-based tests: IgG deamidated gliadin peptide (DGP-IgG) or IgG tissue transglutaminase (tTG-IgG). 1, 2, 3
  • Do not use IgG-based tests in patients with normal IgA levels—they are markedly less accurate in this setting. 2

Children Under 2 Years

  • Combine tTG-IgA with IgG and IgA deamidated gliadin peptides for improved sensitivity. 1, 3

HLA Genetic Testing

HLA-DQ2 and HLA-DQ8 testing has >99% negative predictive value—absence of both alleles essentially rules out celiac disease. 1, 2, 3

When to Use HLA Testing

  • When celiac disease is strongly suspected despite negative serology. 1, 2, 3
  • In patients with equivocal small-bowel histologic findings. 1, 2
  • In patients already on a gluten-free diet without prior testing. 1, 2
  • In patients with discrepant celiac-specific serology and histology. 1

When NOT to Use HLA Testing

  • HLA testing adds no diagnostic value when tTG-IgA is highly elevated—do not use it for diagnosis confirmation in this scenario. 3

Algorithm for Negative Serology with High Clinical Suspicion

  1. Confirm patient is consuming adequate gluten (at least 10g daily for 6-8 weeks). 2
  2. Verify total IgA level is normal to exclude IgA deficiency. 2
  3. Perform HLA-DQ2/DQ8 testing—if positive, proceed to biopsy. 2
  4. If HLA is negative, celiac disease is essentially ruled out. 2

High-Risk Groups Requiring Testing

Test the following populations even without symptoms:

  • First-degree relatives of celiac patients 4, 2
  • Type 1 diabetes mellitus 4, 2
  • Unexplained iron deficiency anemia 4, 2
  • Premature osteoporosis 4, 2
  • Autoimmune thyroid disease 4, 2
  • Down syndrome 4, 2
  • Turner syndrome 4, 3
  • Unexplained liver transaminase elevations 4, 2, 3
  • Primary biliary cirrhosis 4
  • Autoimmune hepatitis 4

Selective Testing Situations

Consider testing when symptoms compatible with celiac disease are present in:

  • Sjögren's syndrome 4
  • Unexplained recurrent fetal loss 4
  • Unexplained delayed puberty 4
  • Selective IgA deficiency 4
  • Irritable bowel syndrome 4
  • Peripheral neuropathy 4
  • Cerebellar ataxia 4
  • Recurrent migraine 4
  • Children with short stature 4

Critical Pitfalls to Avoid

  • Never initiate a gluten-free diet before completing diagnostic testing—this leads to false-negative results and invalidates the workup. 1, 2
  • Never rely solely on serology without biopsy confirmation in adults—this leads to misdiagnosis. 1, 2
  • Do not use antigliadin antibody (AGA) testing—it has poor diagnostic performance compared to tTG-IgA and EMA-IgA. 4, 6
  • Lymphocytic infiltration without villous atrophy is not specific for celiac disease and requires consideration of other causes. 1
  • Symptom improvement on a gluten-free diet has low positive predictive value and should not be used for diagnosis without supportive evidence. 1
  • Seronegative celiac disease can occur and requires biopsy for diagnosis. 2

Follow-Up Testing After Diagnosis

  • Perform follow-up serology at 6 and 12 months after diagnosis, then yearly thereafter. 1, 2
  • Negative serology after treatment does not guarantee intestinal mucosal healing—antibody tests have only 50% sensitivity for detecting persistent villous atrophy in patients on a gluten-free diet. 2, 5
  • Persistently elevated antibodies usually indicate ongoing gluten exposure and continued intestinal damage. 1, 2
  • Patients with persistent or relapsing symptoms require repeat endoscopic biopsies to determine healing, even with negative tTG-IgA. 2

References

Guideline

Celiac Disease Diagnostic Guidelines

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Celiac Disease Diagnosis and Management

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Celiac Disease Diagnosis Guidelines

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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