What is the treatment algorithm for a patient diagnosed with whooping cough (pertussis)?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: December 12, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Treatment Algorithm for Whooping Cough (Pertussis)

All patients with confirmed or probable whooping cough should receive a macrolide antibiotic immediately upon clinical suspicion and be isolated for 5 days from the start of treatment, as early therapy within the first few weeks diminishes coughing paroxysms and prevents disease spread. 1

Immediate Actions Upon Suspicion

  • Start antibiotics immediately without waiting for diagnostic confirmation, as early treatment during the catarrhal phase (first 2 weeks) rapidly clears B. pertussis from the nasopharynx and decreases coughing paroxysms and complications 1, 2
  • Obtain nasopharyngeal aspirate or Dacron swab for culture to confirm diagnosis, though treatment should not be delayed 1
  • Isolate the patient at home and away from work/school for 5 days after starting antibiotics to prevent transmission 1, 2

First-Line Antibiotic Treatment

Azithromycin (Preferred Agent)

Azithromycin is the first-line agent for all age groups due to superior tolerability, better compliance, and equal efficacy compared to erythromycin. 2, 3

Dosing by Age:

  • Infants <6 months: 10 mg/kg/day for 5 days 2
  • Infants ≥6 months and children: 10 mg/kg (maximum 500 mg) on day 1, then 5 mg/kg/day (maximum 250 mg) on days 2-5 2
  • Adults: 500 mg on day 1, then 250 mg/day on days 2-5 2

Key Advantages:

  • Significantly lower risk of infantile hypertrophic pyloric stenosis (IHPS) compared to erythromycin in infants <1 month 2
  • Gastrointestinal adverse events occur in only 18.8% of patients versus 41.2% with erythromycin 3
  • 90% compliance rate versus 55% with erythromycin 3
  • Do not administer with aluminum- or magnesium-containing antacids as they reduce absorption 2

Alternative: Clarithromycin

  • Recommended as first-line for infants 1-5 months of age alongside azithromycin 2
  • Equally effective as erythromycin with better side-effect profile 1

Second-Line Treatment

Erythromycin

Use only when macrolides like azithromycin are unavailable; avoid in infants <6 months due to IHPS risk. 2, 4

Dosing:

  • Children: 40-50 mg/kg/day in divided doses for 14 days 1, 4
  • Adults: 1-2 g/day in divided doses for 14 days 1, 4
  • Pertussis-specific dosing: 40-50 mg/kg/day in divided doses for 5-14 days 4

Critical Warnings:

  • Associated with IHPS in infants <1 month; avoid if possible 2
  • Inhibits cytochrome P450 enzyme system; check for drug interactions 2
  • Resistance is rare (<1%) 1

Alternative for Macrolide Contraindications

Trimethoprim-Sulfamethoxazole (TMP-SMZ)

  • For patients >2 months with macrolide contraindications or hypersensitivity 2
  • Effective in eradicating B. pertussis 5

Treatment Timing and Expected Outcomes

Early Treatment (Catarrhal Phase: First 2 Weeks)

  • Maximum clinical benefit: Rapidly clears bacteria, reduces coughing paroxysms, and prevents complications 1, 2
  • This is the critical window for effective treatment 1

Late Treatment (Paroxysmal Phase: >3 Weeks)

  • Limited clinical benefit for symptom reduction 2
  • Still indicated to prevent transmission to others 2
  • Approximately 80-90% of untreated patients spontaneously clear B. pertussis within 3-4 weeks 2

Important Caveat:

  • Cough may persist for weeks to months despite appropriate antibiotic treatment, but the patient is no longer contagious after 5 days of antibiotics 6
  • Antibiotics eliminate bacteria but do not alter the subsequent clinical course once paroxysmal stage is established 5

Therapies That Do NOT Work

Do not prescribe the following as they have no proven benefit: 1, 2

  • Long-acting β-agonists
  • Antihistamines
  • Corticosteroids
  • Pertussis immunoglobulin

Postexposure Prophylaxis

Use the same antibiotic regimens and dosing as for treatment. 2

Indications for Prophylaxis:

  • All household contacts 2
  • High-priority groups: Infants <12 months, pregnant women in third trimester, healthcare workers with known exposure 2, 6
  • Administer within 21 days of exposure 2

Return to School/Work Timeline

  • With antibiotics: May return after 5 days of treatment 1, 2, 6
  • Without antibiotics: Must remain isolated for 21 days after cough onset 6

Vaccination Considerations

  • Verify and update patient's vaccination status 2
  • Pregnant women should receive Tdap between 27-36 weeks' gestation with each pregnancy to convey immunity to newborn 2, 7
  • Vaccine immunity wanes after 5-10 years, making previously vaccinated individuals susceptible 2
  • Ensure all household contacts are up to date with pertussis vaccination 2

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Treatment of Pertussis

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Antibiotics for whooping cough (pertussis).

The Cochrane database of systematic reviews, 2007

Guideline

Return to School After Whooping Cough Treatment

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Pertussis: Common Questions and Answers.

American family physician, 2021

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.