What organism does doxycycline (Doxycycline) treat in sexually transmitted diseases (STDs)?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: December 16, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Doxycycline in STDs: Target Organisms

Doxycycline is used to treat three primary bacterial sexually transmitted infections: Chlamydia trachomatis, Treponema pallidum (syphilis), and Neisseria gonorrhoeae (gonorrhea), with the highest efficacy against chlamydia and syphilis. 1

Primary Target Organisms

Chlamydia trachomatis (Most Effective)

  • Doxycycline 100 mg orally twice daily for 7 days is first-line treatment for uncomplicated chlamydial infections, with 97-98% cure rates 2, 3
  • Effective for uncomplicated urethral, endocervical, and rectal infections caused by C. trachomatis 4
  • Also treats lymphogranuloma venereum, trachoma, inclusion conjunctivitis, and nongonococcal urethritis caused by Ureaplasma urealyticum 4
  • The CDC updated recommendations in 2021 from single-dose azithromycin to 7-day doxycycline as preferred treatment 5

Treponema pallidum (Syphilis)

  • Doxycycline is an alternative treatment for syphilis in nonpregnant patients with severe penicillin allergy or when penicillin is unavailable 1
  • When used as postexposure prophylaxis (doxy PEP), reduces syphilis incidence by approximately 77-87% 1, 6
  • Indicated when penicillin is contraindicated 4

Neisseria gonorrhoeae (Gonorrhea - Limited Efficacy)

  • Doxycycline is NOT a recommended treatment for gonorrhea due to elevated antimicrobial resistance, but remains effective against many strains in the United States 1
  • When used as postexposure prophylaxis, reduces gonorrhea incidence by approximately 50-57% 1, 6
  • Historically used for uncomplicated gonorrhea when penicillin was contraindicated, but resistance patterns have changed 4

Novel Prophylactic Use (Doxy PEP)

CDC 2024 Recommendations for Prevention

  • The CDC recommends doxycycline 200 mg taken within 72 hours after condomless sex (doxy PEP) for MSM and transgender women who had a bacterial STI diagnosed in the past 12 months 1
  • Reduces combined incidence of syphilis, chlamydia, and gonorrhea by approximately two-thirds compared to standard care 6
  • Maximum dose: 200 mg every 24 hours 1
  • Should be offered following shared decision-making with providers 1

Efficacy by Organism in Prevention Studies

  • Chlamydia: 74-88% reduction 6
  • Syphilis: 77-87% reduction 6
  • Gonorrhea: 50-57% reduction 6

Important Clinical Considerations

Coinfection Patterns

  • When gonorrhea is confirmed, always treat for chlamydia concurrently due to 20-40% coinfection rates 3
  • Patients diagnosed with any bacterial STI should be tested for gonorrhea, syphilis, and HIV at initial visit 2

Resistance Concerns

  • Tetracycline-resistant gonorrhea occurred in 5 of 13 participants using doxycycline prophylaxis versus 2 of 16 in standard care groups in recent trials 6
  • Despite in vitro resistance reports for C. trachomatis, clinical significance remains unknown 7
  • Microbiologic failure has been documented even after prolonged doxycycline courses 7

Contraindications and Special Populations

  • Absolutely contraindicated in pregnancy 2
  • For pregnant women with chlamydia: use azithromycin 1 g single dose or amoxicillin 500 mg three times daily for 7 days 2, 3
  • Common adverse effects include photosensitivity and gastrointestinal symptoms including esophageal erosion 1

Partner Management

  • All sex partners from the previous 60 days must be evaluated, tested, and empirically treated 2, 8
  • Patients must abstain from sexual intercourse for 7 days after initiating treatment and until all partners complete treatment 2, 3
  • Failure to treat partners leads to reinfection in up to 20% of cases 2

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Chlamydia Treatment Guidelines

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Chlamydia and Gonorrhea Treatment Guidelines

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

[Choice of antimicrobial drug for infections caused by Chlamydia trachomatis and Chlamydophila pneumoniae].

Acta medica Croatica : casopis Hravatske akademije medicinskih znanosti, 2004

Guideline

Treatment for Chlamydia Infection with IUD in Place

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.