Diagnostic Testing for Genital Herpes Simplex Virus
For patients with active genital lesions, nucleic acid amplification testing (NAAT/PCR) is the first-line diagnostic test due to its superior sensitivity and specificity, and viral culture should only be used when NAAT is unavailable. 1
Diagnostic Approach for Active Lesions
First-Line Testing: NAAT/PCR
- NAAT/PCR is 11-71% more sensitive than viral culture and should be the primary diagnostic test for all patients presenting with active genital lesions. 1
- PCR allows simultaneous detection and typing of HSV-1 and HSV-2 in a single reaction, which is essential for prognosis and counseling. 1, 2
- NAAT permits less strict sample transportation conditions compared to viral culture, making it more practical for clinical use. 1
Sample Collection Technique
- Sample fluid from intact vesicles or the base of ulcers by opening vesicles with a sterile needle and collecting content with a swab. 3, 1
- For males without visible lesions: obtain urethral swabs by inserting a cotton-wool or Dacron swab 0.5-2 cm into the external urethral meatus. 3, 1
- For females without visible lesions: obtain cervical swabs by inserting a swab 2 cm into the cervical canal, or vaginal swabs from the posterior vaginal wall. 3, 1
Second-Line Testing: Viral Culture
- Viral culture should only be used when NAAT is unavailable, as it has significantly lower sensitivity. 3, 1
- Samples for viral culture must be transported on ice and processed within 24 hours to maintain viability. 1
Tests to Avoid
- Do not use direct immunofluorescence assay or Tzanck smear due to lack of sensitivity. 1
- Never rely on clinical diagnosis alone without laboratory confirmation, as clinical differentiation from other causes of genital ulceration (syphilis, chancroid, Crohn's disease, Behçet syndrome) is unreliable. 3
Serological Testing Strategy
When to Order Type-Specific HSV-2 Serology
Type-specific serology should be reserved for specific clinical scenarios and is NOT recommended for widespread screening of asymptomatic populations. 3, 4
Appropriate Indications:
- Patients with genital symptoms suggestive of herpes but negative NAAT/culture results. 3
- Patients told they have genital herpes without virologic confirmation. 3
- Sexual partners of persons with confirmed HSV-2 infection. 3, 4
- Pregnant women at risk of acquiring HSV infection close to delivery. 1, 4
- Men who have sex with men. 1, 4
- HIV-positive individuals. 1, 4
Algorithmic Approach to Serologic Testing
Step 1: Order type-specific HSV-2 IgG test using glycoprotein G-based EIA or CLIA 4
Step 2: Interpret based on index value:
- Index <0.9: Negative 4
- Index 0.9-1.1: Indeterminate, repeat in 2-4 weeks 4
- Index 1.1-2.9: Low positive - REQUIRES CONFIRMATION 4
- Index ≥3.0: Positive (specificity 78.6%, may still consider confirmation in low-prevalence populations) 3, 4
Step 3: For low-positive results (1.1-2.9), confirm with second assay using different glycoprotein G antigen 4
- This improves specificity from 93.2% to 98.7% and positive predictive value from 80.5% to 95.6%. 3, 4
- The Biokit HSV-2 rapid assay is recommended as the confirmatory test. 3
Critical Limitations of Serologic Testing
- HSV-1 antibody testing has only 70.2% sensitivity, resulting in frequent false-negative results and should not be used to diagnose genital herpes. 4
- HSV-2 serology has serious specificity problems at low index values: only 39.8% specificity for index values 1.1-2.9. 4
- Patients with HSV-1 infection are significantly more likely to have false-positive HSV-2 results, especially at low index values. 4
- Allow 12 weeks after exposure before testing, as antibodies may not be detectable earlier. 4
- Serology cannot determine the anatomic site of infection or whether a current lesion is caused by HSV. 1
Common Clinical Pitfalls to Avoid
Never order serology when active lesions are present - this misses the opportunity for definitive NAAT/PCR diagnosis that can type the virus and confirm active infection. 4
Never report low-positive HSV-2 results (index 1.1-2.9) without confirmatory testing - this leads to false-positive diagnoses with significant psychological and relationship consequences. 4
Never use HSV-1 serology to diagnose genital herpes - it cannot distinguish oral from genital infection and has poor sensitivity. 4
Never screen asymptomatic general populations - the U.S. Preventive Services Task Force recommends against this practice. 3, 1
Never use HSV molecular assays in the absence of genital ulcers - testing should be directed by clinical presentation. 1
Why HSV Typing Matters
- Up to 50% of first-episode genital herpes cases are caused by HSV-1. 1
- Recurrences and subclinical viral shedding are significantly less frequent with genital HSV-1 than HSV-2. 1
- HSV-2 carries greater stigma and requires different counseling regarding transmission risk and recurrence patterns. 3
- The same antiviral medication dosages are recommended for both HSV-1 and HSV-2 genital infections. 1