Initial Workup for Suspected Inborn Errors of Metabolism (IEM)
The most efficient initial workup for suspected IEM consists of three core tests: plasma amino acids, urine organic acids, and plasma acylcarnitines, which together detect the vast majority of clinically significant metabolic disorders. 1, 2
When to Initiate IEM Workup
The following clinical scenarios mandate immediate metabolic evaluation:
- Developmental regression or episodic metabolic decompensation are the most critical red flags requiring urgent IEM workup 2
- Family history indicators: parental consanguinity, unexplained infant death in siblings, previous sibling death with IEM features, or developmental disabilities in family members 2
- Abnormal newborn screening results, though clinicians must recognize that not all IEMs are included in standard screening panels 2
- Physical examination findings: hepatosplenomegaly (suggesting storage disorders or organic acidemias), coarse facial features (characteristic of mucopolysaccharidoses), or abnormal head size/contour 2
The Core Three-Test Panel
Order these three tests simultaneously as the initial metabolic workup:
- Plasma amino acids - detects amino acid disorders including phenylketonuria, homocystinuria, and maple syrup urine disease 1, 2
- Urine organic acids - identifies organic acidemias such as methylmalonic acidemia, propionic acidemia, and glutaric aciduria 1, 2
- Plasma acylcarnitines - reveals fatty acid oxidation disorders (MCAD, VLCAD, CPT deficiencies) and additional organic acidemias 1, 2
This triad provides comprehensive coverage of the three major IEM categories: amino acid disorders, organic acidemias, and fatty acid oxidation defects 1
Additional Baseline Tests
Include these with the core panel:
- Plasma carnitine levels (free and total) - essential for interpreting acylcarnitine profiles and detecting primary carnitine deficiency 1
- Basic metabolic panel - provides serum bicarbonate levels that may suggest metabolic acidosis 1
- Blood glucose - hypoketotic hypoglycemia is a hallmark of fatty acid oxidation disorders 1, 3
Critical Pitfall to Avoid
Do NOT order these tests in asymptomatic, low-risk patients. The 2016 American Academy of Pediatrics guidelines explicitly recommend against obtaining urine organic acids, plasma amino acids, or plasma acylcarnitines in infants presenting with lower-risk brief resolved unexplained events (BRUE), as routine screening yields high false-positive rates with minimal diagnostic benefit 1. IEMs cause only 0-5% of such presentations 1
Analytical Platform
Virtually all clinical laboratories use tandem mass spectrometry (MS/MS) as the analytical platform for acylcarnitine analysis, with sensitivity and specificity up to 99% and 99.995% respectively for most disorders 1, 4. This technology allows simultaneous detection of over 30 different metabolic disorders from a single blood spot specimen 4
Confirmatory Testing Pathway
When initial screening suggests a specific disorder:
- Enzyme analysis provides definitive diagnosis once a specific disorder is suspected 2
- Molecular genetic testing identifies specific mutations and enables family counseling 2
- Repeat testing during acute illness may be necessary, as some IEMs only manifest abnormalities during metabolic decompensation 1
Important Clinical Context
The comprehensive metabolic evaluation typically reveals diagnostic patterns within 2-4 days of sample receipt 5. The most commonly detected disorders are phenylalanine hydroxylase deficiency (PKU), methylmalonic acidemia, and primary carnitine deficiency 6. The overall incidence of IEMs detected by MS/MS screening ranges from 1:800 to 1:3000 depending on the population 4, 6