MS/MS in Inborn Errors of Metabolism
Tandem mass spectrometry (MS/MS) is the primary screening technology for detecting inborn errors of metabolism through newborn screening programs, enabling early identification and treatment of multiple metabolic disorders from a single dried blood spot sample. 1
Core Technology and Application
MS/MS has revolutionized newborn screening by allowing simultaneous detection of multiple amino acids, acylcarnitines, and other metabolites from a single blood sample collected on filter paper cards. 1 This technology enables:
- Quantification of phenylalanine (PHE) and calculation of PHE:tyrosine ratios for detecting phenylalanine hydroxylase (PAH) deficiency as early as 24 hours after birth 1
- Detection of elevated PHE levels to distinguish PAH deficiency from generalized aminoacidemia through simultaneous measurement of additional amino acids in the screening panel 1
- Cost-effective screening for multiple inborn errors of metabolism simultaneously, which has been demonstrated to be cost-beneficial compared to older screening methods 1
Clinical Significance in Metabolic Disorders
Primary Applications
MS/MS screening is essential for identifying conditions where early intervention prevents irreversible neurological damage:
- Urea cycle disorders including carbamoyl phosphate synthase (CPS) deficiency, ornithine transcarbamylase (OTC) deficiency, and other enzyme deficiencies that lead to hyperammonemia 1, 2
- Organic acidemias such as methylmalonic aciduria and propionic acidemia, which occur in approximately 1 in 21,000 births 2
- Amino acid disorders including phenylketonuria, where untreated elevated phenylalanine causes profound and irreversible intellectual disability 1
Diagnostic Thresholds and Follow-up
International screening laboratories report varying cutoff levels, with a mean PHE cutoff of 130 μmol/L (range 65-234 μmol/L) and PHE:tyrosine ratio >3 considered abnormal. 1 However, an elevated screening result is nonspecific and requires confirmatory testing - it does not definitively indicate disease presence. 1
When MS/MS detects abnormalities:
- Immediate follow-up testing should include assessment for defects in tetrahydrobiopterin (BH4) synthesis or regeneration 1
- Confirmatory algorithms are available through ACMG ACT sheets for systematic evaluation of abnormal newborn screening results 1
- Genotyping should be obtained for all infants with confirmed elevated metabolites to guide treatment decisions and predict phenotype severity 1
Integration with Clinical Management
Early Detection Benefits
The implementation of MS/MS-based newborn screening has dramatically changed clinical outcomes over the past 50 years. 1 Early identification enables:
- Prompt dietary intervention before irreversible neurological damage occurs in conditions like phenylketonuria 1
- Prevention of hyperammonemic crises in urea cycle disorders through early protein restriction and nitrogen scavenger therapy 2
- Reduced morbidity and mortality through institution of appropriate treatment before symptom onset 3
Limitations and Pitfalls
MS/MS screening has important limitations that clinicians must recognize:
- Enzyme activity levels cannot be measured by MS/MS and are unreliable for phenotypic prediction in many disorders 1
- Novel mutations will be discovered for which phenotypes have not been reported, making prognostication difficult 1
- Some genetic disorders like medium-chain acyl-CoA dehydrogenase deficiency are effectively detected, but the frequency of mutations for undiagnosed inborn errors of metabolism may be similar in sudden unexpected infant deaths and controls 1
- False positives occur, requiring careful clinical correlation and confirmatory testing to avoid overtreatment 1
Clinical Decision-Making Framework
When MS/MS identifies a potential metabolic disorder:
- Immediate referral to metabolic specialist for comprehensive evaluation including multidisciplinary assessment 1
- Confirmatory biochemical testing with plasma amino acids, urine organic acids, and acylcarnitine profiles as indicated 4
- Genetic testing to establish definitive diagnosis and guide treatment intensity 1
- Phenotype prediction based on genotype-phenotype correlations when available, recognizing significant limitations 1
- Treatment initiation based on predicted severity - ranging from dietary modification alone to urgent interventions like hemodialysis for severe hyperammonemia 2
For conditions with unclear phenotype predictions (such as novel mutations), close monitoring every 3-4 months with neurodevelopmental assessments is essential to detect early signs of severe disease requiring aggressive intervention. 1
Monitoring and Long-term Management
MS/MS technology also plays a role in ongoing metabolic monitoring:
- Plasma phenylalanine monitoring in treated PKU patients to maintain levels that allow normal development 1
- Detection of metabolic decompensation during illness or increased metabolic stress 4
- Assessment of dietary compliance and adequacy of metabolic control 5
The goal is maintaining metabolic stability while ensuring adequate nutrition for growth and development, with lower metabolite levels consistently associated with better neurodevelopmental outcomes. 1