What is the next step in managing a patient with a persistent ulcerated lesion on the penis, who initially improved with cephalexin (Cephalosporin antibiotic) 200mg twice daily (BD) for 7 days, but still has the lesion?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: December 26, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Management of Persistent Penile Ulcer After Initial Antibiotic Treatment

This patient requires an urgent biopsy of the penile lesion to establish a definitive diagnosis, as persistent ulceration despite antibiotic therapy raises concern for non-infectious etiologies including malignancy, autoimmune conditions, or atypical infections. 1, 2

Immediate Diagnostic Workup

The persistence of the ulcer after cephalosporin treatment indicates this is not a simple bacterial infection. The following tests must be performed:

Essential Laboratory Testing

  • Serologic testing for syphilis (darkfield microscopy or direct fluorescent antibody for Treponema pallidum) - syphilis is one of the most common causes of genital ulcers in the United States and can present with painless ulcers after initial painful presentation 3, 2
  • HSV culture or PCR - herpes simplex virus is the other leading cause of genital ulcers and may have atypical presentations 3, 2
  • HIV testing and counseling - HIV increases risk of atypical presentations and complications 3, 4
  • Tuberculosis testing if the patient is from an endemic area or has risk factors, as penile TB can present as non-healing ulcers 5

Tissue Diagnosis is Critical

  • Punch, excisional, or incisional biopsy must be performed when there is doubt about the nature of the lesion 3, 1
  • Biopsy is essential to rule out penile squamous cell carcinoma, which commonly presents as ulcerative lesions and is the most common penile malignancy 3, 1
  • Histopathology can also identify granulomatous inflammation, autoimmune conditions like Behçet syndrome, lichen sclerosus, or atypical infections 3, 6

Why the Antibiotic Failed

Cefpodoxime (a third-generation cephalosporin) would be expected to cover common bacterial causes of penile ulceration. The fact that pain resolved but the ulcer persists suggests:

  • The initial pain may have been from secondary bacterial superinfection, which responded to antibiotics, but the underlying cause remains untreated 2
  • Non-infectious etiologies are now the primary concern, including penile intraepithelial neoplasia (PeIN), invasive squamous cell carcinoma, lichen sclerosus, Behçet syndrome, or traumatic ulceration 3, 1
  • Atypical infections such as syphilis (which can have painless ulcers), tuberculosis, or fungal infections require different antimicrobial approaches 3, 2, 5

Clinical Examination Details to Document

Before biopsy, carefully document:

  • Ulcer characteristics: exact diameter, depth, border regularity, base appearance (clean vs. necrotic), presence of induration 3, 1
  • Location: glans (34.5% of penile cancers), prepuce (13.2%), or shaft (5.3%) 3, 1
  • Associated findings: discharge, bleeding, foul odor (suggests delayed diagnosis of malignancy), phimosis (increases cancer risk 25-60%) 3, 1
  • Inguinal lymph nodes: palpable nodes may indicate metastatic disease or reactive lymphadenopathy 3, 1

Imaging Considerations

  • MRI of the penis should be considered if there is uncertainty about depth of invasion or if organ-sparing treatment is being contemplated 3, 1
  • Ultrasound can be used if MRI is unavailable 3, 1
  • Physical examination alone is reliable for estimating tumor size and clinical T stage in most cases 1

Treatment Cannot Proceed Without Diagnosis

Do not initiate empiric treatment beyond the initial antibiotic course without tissue diagnosis. 3, 1, 2 The differential diagnosis is too broad and includes:

Infectious Causes Requiring Specific Therapy

  • Syphilis: requires penicillin G benzathine 2.4 million units IM single dose 3, 2
  • Herpes simplex: requires acyclovir 400mg PO TID for 7-10 days (first episode) 3, 2
  • Tuberculosis: requires 6-9 months of multi-drug anti-tubercular therapy 5

Non-Infectious Causes Requiring Different Approaches

  • Penile cancer/PeIN: may require topical therapy, laser, wide local excision, or partial penectomy depending on stage 3, 1
  • Lichen sclerosus: requires potent topical corticosteroids as first-line treatment 3
  • Behçet syndrome: requires topical steroids initially, with colchicine for prevention of recurrence 3
  • Traumatic ulceration: requires only topical wound care and avoidance of trauma 2, 7

Critical Red Flags

Watch for these concerning features that suggest malignancy:

  • Age over 50 years (median age for penile cancer is 68 years) 1
  • Presence of phimosis (25-60% increased cancer risk) 3, 1
  • History of HPV, tobacco use, or lichen sclerosus (all increase cancer risk) 3, 1
  • Ulcer with irregular borders, induration, or fungating appearance 3, 1
  • Palpable inguinal lymphadenopathy (strongest prognostic factor if malignancy) 1

Common Pitfall to Avoid

The most critical error would be continuing empiric antibiotic therapy or trying multiple antimicrobial agents without establishing a tissue diagnosis. 3, 1, 6 This delays diagnosis of potentially curable malignancy and allows disease progression. One case report documented a patient initially treated as infection who ultimately required glansectomy for necrotizing granulomatous inflammation that could have been managed earlier with corticosteroids if properly diagnosed 6.

References

Guideline

Signs and Diagnosis of Penile Cancer

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Diagnosis and management of genital ulcers.

American family physician, 2012

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Treatment for Epididymitis vs Orchitis

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Traumatic purpuric penile ulcer.

Acta dermatovenerologica Croatica : ADC, 2004

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.