What is the treatment for a urinary tract infection (UTI) with greater than 100,000 colony-forming units (CFU) of yeast per milliliter (mL) of urine?

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Management of Urinary Tract Infection with >100,000 CFU/mL of Yeast

Initial Clinical Decision: Treat or Observe?

Most patients with candiduria >100,000 CFU/mL do NOT require antifungal treatment unless they are symptomatic, neutropenic, very low-birth-weight infants (<1500g), or undergoing urologic procedures. 1, 2

High-Risk Patients Requiring Treatment (Even if Asymptomatic)

  • Neutropenic patients 1
  • Very low-birth-weight infants (<1500g) 1
  • Patients scheduled for urologic procedures within several days 1
  • Patients with fever and candiduria who are severely immunocompromised (concern for disseminated candidiasis) 1

First-Line Management Before Antifungals

Remove or replace indwelling urinary catheters if present—this alone resolves candiduria in approximately 50% of cases. 3, 4, 5 This is the critical first step and may eliminate the need for antifungal therapy entirely. 1


Treatment Algorithm for Symptomatic Candiduria

For Symptomatic Cystitis (Lower UTI)

Oral fluconazole 200 mg (3 mg/kg) daily for 14 days is the first-line treatment for fluconazole-susceptible Candida species. 1, 3, 2

  • Fluconazole achieves high urinary concentrations and has demonstrated 82% efficacy in clinical trials 3, 4
  • A loading dose of 400 mg on day 1 followed by 200 mg daily is an acceptable alternative 6
  • Treatment duration should be at least 2 weeks to decrease likelihood of relapse 1, 3

Alternative Regimens for Fluconazole-Resistant Organisms (especially C. glabrata)

  • Amphotericin B deoxycholate 0.3-0.6 mg/kg IV daily for 1-7 days 1, 2
  • Oral flucytosine 25 mg/kg four times daily for 7-10 days 1, 2
  • Amphotericin B bladder irrigation (50 mg/L sterile water) may be considered for refractory C. glabrata or C. krusei cystitis, though relapse rates are high (>80-90%) 1, 2

Critical Pitfall: Other azoles (voriconazole, posaconazole, itraconazole) and all echinocandins achieve inadequate urine concentrations and should NOT be used for Candida UTI. 1, 4, 5 Lipid formulations of amphotericin B also fail to achieve adequate urinary levels. 1


For Pyelonephritis (Upper UTI)

Oral fluconazole 200-400 mg (3-6 mg/kg) daily for 14 days is first-line for fluconazole-susceptible organisms. 1, 3, 6

  • Use the higher dose range (400 mg daily) for more severe upper tract infections 3
  • For fluconazole-resistant strains (especially C. glabrata):
    • Amphotericin B deoxycholate 0.5-0.7 mg/kg IV daily with or without flucytosine 25 mg/kg four times daily for 14 days 1, 6
    • Flucytosine alone at 25 mg/kg four times daily for 14 days is an alternative 1

For Patients Undergoing Urologic Procedures

Prophylactic treatment is required even if asymptomatic: 1, 2

  • Oral fluconazole 400 mg (6 mg/kg) daily OR
  • Amphotericin B deoxycholate 0.3-0.6 mg/kg IV daily
  • Administer for several days before AND after the procedure 1, 2

Special Clinical Scenarios

Fungus Balls (Bezoars)

Surgical or endoscopic removal is mandatory in adults, combined with antifungal therapy. 1

  • Antifungal regimen: Same as for cystitis or pyelonephritis (fluconazole 200-400 mg daily) 1
  • If nephrostomy tubes are present, irrigation with amphotericin B deoxycholate 25-50 mg in 200-500 mL sterile water through the tube 1
  • Continue treatment until symptoms resolve AND urine cultures are negative for Candida 1

Suspected Disseminated Candidiasis

If candiduria occurs with fever in a severely immunocompromised patient, treat as candidemia with echinocandin therapy (not fluconazole). 1 This represents hematogenous seeding of the kidneys, not ascending UTI.


Critical Monitoring and Follow-Up

  • Obtain follow-up urine cultures to document clearance after completing therapy 7
  • If treatment fails despite appropriate therapy, obtain imaging (ultrasound or CT) to identify:
    • Fungus balls 3
    • Hydronephrosis 3
    • Abscesses 3
    • Structural abnormalities 3
  • Consider removing or replacing nephrostomy tubes or ureteral stents if present 2

Common Pitfalls to Avoid

  1. Do not treat asymptomatic candiduria in non-high-risk patients—this leads to unnecessary antifungal exposure and potential resistance. 1, 2

  2. Colony count cannot reliably differentiate colonization from infection, especially with indwelling catheters—clinical symptoms and risk factors must guide treatment decisions. 2

  3. Never use echinocandins or non-fluconazole azoles for Candida UTI—they do not achieve therapeutic urinary concentrations. 1, 4, 5

  4. Always remove catheters before or during treatment—failure to address this predisposing factor leads to treatment failure and relapse. 1, 3, 4

  5. Bladder irrigation with amphotericin B has >80% relapse rates—reserve this only for refractory fluconazole-resistant cystitis when systemic therapy has failed. 1, 2

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Treatment of Urine Candida Infection

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Treatment of Candida tropicalis UTI

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Candida urinary tract infections: treatment options.

Expert review of anti-infective therapy, 2007

Research

Candida urinary tract infections in adults.

World journal of urology, 2020

Research

[Recommendations of the Infectious Disease Committee of the French Association of Urology. Diagnosis, treatment and monitoring candiduria].

Progres en urologie : journal de l'Association francaise d'urologie et de la Societe francaise d'urologie, 2011

Guideline

Treatment of Non-Candida Yeast Urinary Tract Infections

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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