Bacterial Colonizers Requiring Higher Loads for Infection Diagnosis
Among the listed bacteria, Streptococcus pneumoniae, Haemophilus influenzae, Moraxella catarrhalis, and Staphylococcus aureus are established colonizers of the upper respiratory tract, and their detection requires higher bacterial loads or quantitative assessment to distinguish colonization from true infection. 1
Primary Colonizers
Established Nasopharyngeal Colonizers
S. pneumoniae, H. influenzae, and M. catarrhalis are the three major respiratory pathogens that routinely colonize the nasopharynx, with up to 70% of children colonized by at least one of these organisms by 12 months of age 1
S. pneumoniae colonizes the nasopharynx in up to two-thirds of children at any given time, with each strain persisting for 1-12 months; by age 3 years, over 90% of children have been colonized 1
H. influenzae (nontypeable) sequentially colonizes the nasopharynx starting in infancy, with 44% of children colonized by age 2 years, each strain carried for 1-7 months (mean 2.2 months) 1
M. catarrhalis colonizes 78% of children by age 2 years, with sequential colonization by different strains throughout childhood 1
S. aureus colonizes the nasopharynx with increasing frequency as children age, showing a negative association with the other three colonizers 1, 2
Critical Distinction: Colonization vs. Infection
Studies have failed to demonstrate that S. pneumoniae, H. influenzae, or M. catarrhalis produce acute bronchitis in adults without underlying lung disease, as these studies failed to distinguish between colonization and acute infection 1
Quantitative PCR with bacterial load assessment is recommended to distinguish disease-causing strains from commensal colonization, particularly for H. influenzae where the ompP6-based real-time PCR facilitates this discrimination 1
For S. pneumoniae, a cut-off level corresponding to 10^5 CFU/mL has been established to distinguish colonization from infection in sputum samples 1
Non-Colonizers (True Pathogens)
Organisms That Do Not Colonize
Bordetella pertussis, Mycoplasma pneumoniae, and Chlamydophila pneumoniae are established as nonviral causes of acute bronchitis but are not colonizers—their presence indicates active infection 1
Legionella pneumophila does not colonize the respiratory tract; detection indicates active infection, though rates vary considerably between hospitals based on water supply colonization 1
Coxiella burnetii (Q fever) does not colonize and represents active infection when detected 1
Streptococcus pyogenes is the predominant bacterial pathogen in pharyngitis/tonsillitis but accounts for only 2-5% of acute bacterial rhinosinusitis cases and does not represent normal colonization 1, 3
Klebsiella pneumoniae is not a colonizer of the upper respiratory tract in healthy individuals; its presence typically indicates healthcare-associated infection or pneumonia in patients with underlying conditions 1
Clinical Implications
When to Suspect True Infection vs. Colonization
Higher bacterial loads determined by quantitative PCR are useful for predicting disease severity and distinguishing infection from colonization, particularly for S. pneumoniae and H. influenzae 1
Adults have shorter duration of carriage than children for colonizing bacteria, making detection in adults more likely to represent active infection 1
Colonization increases during winter and viral upper respiratory infections, which often results in these colonizing organisms causing bacterial otitis media and sinusitis 1
Antimicrobial treatment increases carriage of antimicrobial-resistant strains of colonizing pathogens, complicating interpretation of culture results 1
Diagnostic Approach
Gram stain and culture of sputum do not reliably detect M. pneumoniae, C. pneumoniae, or B. pertussis and are not recommended for evaluation of uncomplicated acute bronchitis 1
For colonizers (S. pneumoniae, H. influenzae, M. catarrhalis, S. aureus), quantitative methods or clinical correlation with radiographic infiltrates is essential to establish causation 1
For non-colonizers (B. pertussis, M. pneumoniae, C. pneumoniae, L. pneumophila, C. burnetii, S. pyogenes, K. pneumoniae), detection by appropriate methods (PCR, serology, culture) indicates active infection requiring treatment 1