What is the differential diagnosis for a child presenting with acute gastroenteritis?

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Differential Diagnosis for Pediatric Acute Gastroenteritis

Primary Differential Considerations

When a child presents with vomiting and diarrhea, the differential diagnosis must systematically exclude serious non-gastroenteritis conditions before attributing symptoms to viral gastroenteritis. 1, 2

Infectious Causes

Viral Gastroenteritis (Most Common)

  • Accounts for approximately 70% of acute gastroenteritis cases in children 3
  • Rotavirus, norovirus, and adenovirus are the predominant pathogens 4
  • Typically presents with watery diarrhea, vomiting, low-grade fever, and abdominal pain 5
  • Self-limited course lasting 3-7 days 4

Bacterial Gastroenteritis

  • Consider when bloody diarrhea, high fever (>39°C), and systemic toxicity are present 1, 2
  • Key pathogens include Salmonella, Shigella, Campylobacter, and enterohemorrhagic E. coli 1, 2
  • Stool culture is specifically indicated for dysentery (bloody diarrhea) 2
  • Risk factors include recent antibiotic use, foreign travel, exposure to contaminated food/water, or immunodeficiency 1

Parasitic Infections

  • Giardia and Cryptosporidium should be considered with prolonged diarrhea (>7 days) 6
  • More common in developing countries or after travel 6

Critical Non-Gastroenteritis Diagnoses to Exclude

Urinary Tract Infection/Pyelonephritis

  • Vomiting and abdominal pain can be the primary presentation in young children 1
  • Obtain urinalysis with microscopy and urine culture when urinary symptoms present (reduced volume, increased frequency) 1
  • Particularly important in infants and young children who may not localize symptoms 1

Surgical Emergencies

  • Intussusception: Intermittent severe abdominal pain, "currant jelly" stools, palpable abdominal mass 2
  • Appendicitis: Persistent right lower quadrant pain, fever, anorexia, rebound tenderness 2
  • Malrotation with volvulus: Bilious vomiting, severe abdominal pain, bloody stools, signs of shock 2
  • Severe abdominal pain disproportionate to examination findings mandates surgical evaluation 1

Metabolic and Endocrine Disorders

  • Diabetic ketoacidosis: Vomiting, abdominal pain, rapid deep breathing (Kussmaul respirations), altered mental status 1
  • Inborn errors of metabolism: Consider in infants with recurrent vomiting, lethargy, and failure to thrive 6
  • Adrenal insufficiency: Vomiting, dehydration, hypotension, hyponatremia 6

Central Nervous System Pathology

  • Meningitis/encephalitis: Vomiting with fever, altered mental status, nuchal rigidity, bulging fontanelle in infants 1
  • Increased intracranial pressure: Projectile vomiting, headache, altered consciousness 6

Toxic Ingestions

  • Food poisoning from preformed toxins (Staphylococcus aureus, Bacillus cereus) presents with rapid onset vomiting within 1-6 hours 3
  • Accidental ingestion of medications or household products 6

Age-Specific Considerations

Infants <3 Months

  • Lower threshold for serious bacterial infection including sepsis 1
  • Consider pyloric stenosis (projectile non-bilious vomiting, palpable "olive" mass) 6
  • Necrotizing enterocolitis in premature infants 6
  • Blood culture indicated if febrile or toxic-appearing 1

Immunocompromised Children

  • Broader differential including opportunistic infections 1
  • Lower threshold for admission and aggressive management 1
  • Consider cytomegalovirus, cryptosporidium, and other atypical pathogens 1

Clinical Approach to Narrowing the Differential

Red Flags Requiring Immediate Alternative Diagnosis Consideration:

  • Bilious vomiting (suggests obstruction) 2
  • Severe abdominal pain out of proportion to examination 1, 2
  • Altered mental status beyond expected dehydration 1, 2
  • Absent bowel sounds (contraindication to oral rehydration) 1, 2
  • Bloody diarrhea with fever and systemic toxicity 1, 2
  • Age <3 months with fever 1
  • Signs of shock or severe dehydration (≥10% fluid deficit) 1, 2

Historical Features Supporting Viral Gastroenteritis:

  • Acute onset of watery diarrhea and vomiting 5, 4
  • Known sick contacts or community outbreak 4
  • No recent antibiotic use or foreign travel 1
  • Absence of bloody stools 5
  • Self-limited course with gradual improvement 4

Physical Examination Priorities:

  • Assess hydration status using skin turgor, capillary refill, respiratory pattern, and mental status 1, 2, 7
  • Auscultate for bowel sounds before initiating oral therapy 2
  • Palpate abdomen for focal tenderness, masses, or peritoneal signs 2
  • Check for nuchal rigidity and fontanelle tension in infants 1

Common Pitfalls to Avoid

  • Do not assume viral gastroenteritis without excluding urinary tract infection, especially in young children with vomiting and abdominal pain 1
  • Do not miss surgical emergencies by attributing all vomiting and diarrhea to gastroenteritis without careful abdominal examination 2
  • Do not overlook diabetic ketoacidosis in children with vomiting, abdominal pain, and rapid deep breathing 1
  • Recognize that bloody diarrhea requires stool culture and consideration of bacterial pathogens before attributing to viral causes 2

References

Guideline

Management of Gastroenteritis

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Guideline

Management of Child with Acute Gastroenteritis

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Treatment Approach for Acute Gastroenteritis

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Gastroenteritis in Children.

American family physician, 2019

Research

Acute gastroenteritis in children.

Australian family physician, 2005

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Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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