Treatment of Co-Infection with Influenza and COVID-19
When both influenza and COVID-19 are confirmed, treat both infections concurrently with oseltamivir or baloxavir for influenza according to standard guidelines while continuing COVID-19-specific therapies without modification. 1
Diagnostic Confirmation
- Test for both pathogens using PCR of nasopharyngeal secretions when clinical suspicion exists, as coinfection rates of 0.5-2% have been documented in COVID-19 patients 1, 2
- Obtain blood and sputum cultures if bacterial superinfection is suspected, particularly in patients with multidrug-resistant pathogen risk factors 2
- Consider procalcitonin testing to guide antibiotic decisions, as low values early in illness can safely guide withholding or early stopping of antibiotics in less severe disease 2
Antiviral Treatment Strategy
For Influenza Component:
- Administer oseltamivir or baloxavir immediately upon confirmation following standard influenza treatment guidelines 2, 1
- Do not delay or withhold influenza antivirals due to concurrent COVID-19 1
For COVID-19 Component:
- For hospitalized patients requiring oxygen: Dexamethasone 6 mg daily for up to 10 days 3
- For hospitalized patients or high-risk outpatients: Consider remdesivir - 200 mg loading dose on Day 1, then 100 mg daily maintenance doses 4, 3
- Treatment duration: 5 days for non-ventilated patients, 10 days for those requiring invasive mechanical ventilation/ECMO 4
- For mild-moderate COVID-19 in high-risk outpatients: Consider nirmatrelvir/ritonavir or monoclonal antibodies if available 3
Antibiotic Considerations
- Consider empirical antibiotics if bacterial superinfection cannot be ruled out, as bacterial coinfection occurs in approximately 40% of viral respiratory infections requiring hospitalization 1
- For low-risk inpatients: β-lactam (ampicillin-sulbactam, ceftriaxone, or cefotaxime) plus macrolide (azithromycin) or doxycycline, OR respiratory fluoroquinolone monotherapy 2
- For high-risk ICU patients: β-lactam plus macrolide OR β-lactam plus fluoroquinolone 2
- De-escalate antibiotics within 48 hours if cultures are negative and patient is improving 2
- Limit antibiotic duration to 5 days for most patients with community-acquired pneumonia 2
Supportive Care Measures
- Oxygen supplementation to maintain SpO2 >90-96% 3
- Thromboprophylaxis with anticoagulation given increased pulmonary embolism risk in COVID-19 3, 2
- Careful fluid management to avoid volume overload 3
- Monitor hepatic function and prothrombin time before and during remdesivir treatment 4
Critical Care Considerations
- For severe ARDS (PaO2/FiO2 ≤100 mm Hg): Implement prone positioning early 2
- Lung-protective ventilation with tidal volumes ≤6 mL/kg predicted body weight and plateau pressure ≤30 cm H2O 2
- Consider neuromuscular blockade and ECMO for refractory hypoxemia 2
- Avoid routine corticosteroids for viral pneumonia outside of COVID-19 indications 2
Important Caveats
- Do NOT stop immunosuppressive medications during influenza prophylaxis if patient is on bispecific antibodies or other immunotherapy 1, 2
- Patients with COVID-19 have longer illness duration (median 12 days) compared to influenza (median 7-9 days), so expect prolonged recovery 5
- COVID-19 patients require longer mechanical ventilation duration and have higher mortality risk (40% vs 19%) compared to influenza in ICU settings 6
- Monitor for drug interactions, particularly with lopinavir-ritonavir, nirmatrelvir-ritonavir, and other concurrent medications 2, 1
- Establish treatment escalation plans early, as COVID-19 patients may deteriorate rapidly 2