Can headaches and diarrhea be side effects of Ozempic (semaglutide) after 3 weeks of treatment?

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Last updated: January 17, 2026View editorial policy

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Yes, Headache and Diarrhea Are Common Side Effects of Ozempic (Semaglutide)

Both headache and diarrhea are well-documented side effects of Ozempic (semaglutide), and experiencing them during your third week of treatment is entirely consistent with the expected adverse effect profile of this medication. 1, 2

Gastrointestinal Side Effects Are the Most Common

  • Diarrhea is one of the most frequently reported side effects of semaglutide, occurring in 16-32% of patients depending on the dose, compared to 7-16% with placebo. 3, 1
  • Nausea, vomiting, diarrhea, abdominal pain, and constipation occur in the majority of patients taking Ozempic, though these symptoms are typically dose-dependent and transient. 1, 2
  • Most gastrointestinal adverse effects, including diarrhea, are most pronounced during initial treatment or dose escalation and typically occur within the first few weeks. 1
  • These gastrointestinal symptoms usually improve with continued use or dose adjustment and are considered functional rather than indicating mucosal injury. 1

Headache Is Also a Common Side Effect

  • Headache is reported in 8-22% of patients taking semaglutide across various clinical trials. 3, 1
  • Headache is listed among the most common adverse effects in the FDA drug label for Ozempic. 2
  • Like gastrointestinal symptoms, headaches are often more common during the initial weeks of treatment. 1

Timeline and Your Third Week of Treatment

  • Your timing at 3 weeks is precisely when these side effects are most likely to occur, as 70-80% of gastrointestinal adverse effects happen within the first 2 weeks, and many persist into weeks 3-4. 3
  • The good news is that 60-65% of gastrointestinal side effects resolve within the first month of treatment. 3
  • Most adverse events occur during the first week and typically resolve within a few days to weeks. 4, 1

When to Be Concerned

While headache and diarrhea are common and usually manageable, you should contact your healthcare provider if:

  • Diarrhea is severe or persistent, as it can lead to dehydration and potentially cause kidney problems. 2
  • You experience signs of dehydration including decreased urination, dizziness, or dry mouth. 2
  • Headache is severe or accompanied by vision changes, as semaglutide can rarely affect vision. 2
  • You develop severe abdominal pain that doesn't go away, which could indicate pancreatitis. 2
  • Symptoms worsen rather than improve over the next 1-2 weeks. 1

Management Strategies

  • Ensure adequate fluid intake to prevent dehydration from diarrhea, which is crucial to avoid kidney complications. 1, 2
  • Take the medication with food and reduce meal sizes to help minimize nausea and gastrointestinal symptoms. 1
  • Avoid high-fat foods, alcohol, and carbonated drinks, which can worsen gastrointestinal side effects. 1
  • If symptoms are intolerable, discuss with your provider whether staying at your current dose longer before escalating might be appropriate, as slow titration minimizes side effects. 1

Important Safety Note

Do not stop Ozempic abruptly without consulting your healthcare provider, especially if you're taking it for diabetes management, as this could affect your blood sugar control. 2

References

Guideline

Side Effects of Semaglutide

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Prucalopride Treatment Duration

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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