What is the recommended treatment for a patient presenting with bacterial diarrhoea?

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Last updated: January 17, 2026View editorial policy

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Treatment of Bacterial Diarrhoea

Antibiotics are NOT routinely indicated for bacterial diarrhoea; rehydration is the cornerstone of treatment, with antimicrobials reserved only for specific high-risk groups including infants <3 months, patients with bacillary dysentery (Shigella), recent international travelers with fever ≥38.5°C, immunocompromised patients with bloody diarrhoea, and suspected enteric fever. 1, 2

Initial Assessment and Risk Stratification

Determine if antibiotics are indicated by evaluating:

  • Age: Infants <3 months with suspected bacterial etiology require empiric treatment 1, 2
  • Clinical presentation: Fever ≥38.5°C, bloody diarrhoea, signs of sepsis, or bacillary dysentery warrant antibiotics 1, 2
  • Travel history: Recent international travel with fever suggests empiric treatment 2
  • Immune status: Immunocompromised patients with severe illness and bloody diarrhoea require antibiotics 1, 2
  • Suspected pathogen: Enteric fever with sepsis requires immediate empiric treatment after obtaining cultures 1, 2

Critical Contraindication

NEVER give antibiotics for STEC O157:H7 or Shiga toxin 2-producing E. coli, as this significantly increases the risk of hemolytic uremic syndrome (HUS). 1, 2 This is a moderate-quality evidence recommendation that takes absolute priority over empiric treatment considerations. 1

Antibiotic Selection When Indicated

For Adults:

  • First-line: Azithromycin (single 1-gram dose or 500 mg daily for 3 days) 2, 3
  • Second-line: Fluoroquinolones (ciprofloxacin 750 mg single dose or 500 mg twice daily for 3 days) only if azithromycin unavailable and in regions with documented low resistance 2, 3
  • Rationale: Fluoroquinolone-resistant Campylobacter now exceeds 90% in many regions including Thailand and India, making azithromycin superior 2, 3

For Children:

  • Infants <3 months: Third-generation cephalosporin (ceftriaxone) is the preferred agent 1, 2
  • Children >3 months: Azithromycin based on local susceptibility patterns and travel history 1, 2

Pathogen-Specific Treatment:

  • Shigella: Azithromycin 500 mg twice daily for 3 days (first-line) or ceftriaxone 100 mg/kg/day 2
  • Campylobacter: Azithromycin 500 mg daily for 3 days due to high fluoroquinolone resistance 2
  • Cholera: Azithromycin single dose is superior to ciprofloxacin, reducing diarrhoea duration by more than 1 day 2
  • Non-typhoidal Salmonella: Treat ONLY high-risk patients (severe infection, age <6 months or >50 years, immunocompromised, prosthetics, valvular heart disease) 2

Rehydration Protocol (Essential for ALL Patients)

  • Mild to moderate dehydration: Reduced osmolarity oral rehydration solution (ORS) containing 50-90 mEq/L sodium 1, 2
  • Replace ongoing losses: 10 mL/kg of ORS for each watery stool 4
  • Severe dehydration: Intravenous fluids for shock, altered mental status, or ileus 2
  • Continue normal food intake guided by appetite with small, light meals; avoid fatty, heavy, spicy foods and caffeine 4

When NOT to Use Antibiotics

  • Acute watery diarrhoea in immunocompetent patients without travel history 1, 2
  • Asymptomatic contacts of patients with bloody or watery diarrhoea 1, 2
  • Confirmed or suspected STEC/EHEC infection (obtain stool culture and Shiga toxin testing first) 1, 2
  • Uncomplicated watery diarrhoea without fever or blood 2

Diagnostic Workup Before Treatment

  • Obtain stool culture immediately if considering antibiotics, especially for bloody diarrhoea 1
  • Check for Shiga toxin before starting antibiotics in bloody diarrhoea cases 2
  • Assess hydration status: Examine skin turgor, capillary refill, mental status, mucous membranes 1

Common Pitfalls to Avoid

  • Never neglect rehydration while focusing on antimicrobials, as dehydration is the primary cause of morbidity and mortality 2, 4
  • Never give antibiotics empirically for bloody diarrhoea without ruling out STEC first 2
  • Avoid overuse of fluoroquinolones, which should only be used when no more appropriate options are available due to FDA safety warnings 2
  • Do not treat non-typhoidal Salmonella routinely; only treat high-risk patients 2

Reassessment and Follow-Up

  • If symptoms persist >14 days: Consider non-infectious causes (inflammatory bowel disease, lactose intolerance, microscopic colitis) 1, 4
  • If no response within 48-72 hours: Reassess for antibiotic resistance, fluid and electrolyte imbalances, or inadequate rehydration 2, 4
  • Modify or discontinue antimicrobials when a clinically plausible organism is identified 2

References

Guideline

Indications for Antimicrobial Treatment in Childhood Diarrhea

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Empiric Antibiotic Use in Diarrhea

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Management of Persistent Watery Diarrhea

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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