What are the potential side effects and dangers of receiving the Human Papillomavirus (HPV) vaccine?

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Last updated: January 18, 2026View editorial policy

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HPV Vaccine Side Effects and Safety Profile

Most Common Side Effects

The HPV vaccine is safe and well-tolerated, with the most common side effect being injection site pain occurring in up to 94% of recipients, followed by headache in approximately 50% of patients. 1

Local Reactions (Most Frequent)

  • Pain at injection site is the predominant side effect, reported in up to 94% of vaccine recipients compared to 88% of placebo recipients 1
  • Redness and swelling at the injection site occur commonly but are typically mild to moderate in intensity 1
  • These local reactions are self-limited and resolve spontaneously within days 2

Systemic Side Effects (Common but Mild)

  • Headache occurs in up to 50% of patients receiving Gardasil 1
  • Fever (temperature >100°F or >38°C) develops in approximately 4.0-4.9% of recipients after any of the three doses 1, 3
  • Fatigue and myalgia are more prevalent in vaccine recipients compared to placebo 4
  • Gastrointestinal symptoms (nausea) occur at similar rates between vaccine and placebo groups 1
  • Most systemic reactions are rated as mild or moderate in intensity and decrease with subsequent doses 1

Serious Adverse Events (Extremely Rare)

Vaccine-related serious adverse events occur in less than 0.1% of recipients, with no causal relationship established between the vaccine and severe complications. 1, 3

Important Safety Data

  • No increased risk of Guillain-Barré syndrome, stroke, venous thromboembolism, seizures, or anaphylaxis has been documented 1
  • Autoimmune disorders showed no statistically significant difference between vaccine and placebo groups (0.08% vs 0.03% for conditions like arthritis) 1
  • In clinical trials, 10 deaths occurred in the vaccine group and 7 in the placebo group, with none considered vaccine-related 1
  • Deaths were attributed to motor vehicle accidents, intentional overdose/suicide, pulmonary embolus, sepsis, cancer, arrhythmia, and asphyxia 1

Syncope (Fainting) - Important Clinical Consideration

Post-vaccination syncope can occur, particularly in adolescents, requiring a 15-minute observation period after administration. 1, 3

  • This vasovagal reaction has been reported following other intramuscular vaccinations 1
  • Mandatory observation for 15 minutes after injection prevents injury from falls 1
  • More common than fever among adolescent recipients 3

Pregnancy-Related Safety

Inadvertent Administration During Pregnancy

  • Among 1,244 pregnancies in vaccine recipients vs 1,272 in placebo recipients, spontaneous pregnancy loss rates were identical (25% in both groups) 1
  • Five congenital abnormalities occurred in infants born to women vaccinated within 30 days of pregnancy onset (pyloric stenosis with ankyloglossia, congenital megacolon, hydronephrosis, club foot, hip dysplasia) compared to zero in placebo group 1
  • An expert panel determined these abnormalities were unrelated and consistent with background rates (2-4% of all US live births) 1
  • Ten congenital abnormalities occurred in vaccine recipients vs 16 in placebo recipients when pregnancy occurred beyond 30 days after vaccination 1

Recommendations for Pregnancy

  • Vaccination should be delayed until after pregnancy completion 5
  • If pregnancy is discovered after starting the series, postpone remaining doses until after delivery 5
  • No specific intervention needed if a dose was inadvertently given during pregnancy 5
  • The vaccine is Category B based on animal studies showing no harm to the fetus 1
  • Breastfeeding women can receive the vaccine without restrictions 5

Contraindications and Special Populations

Specific Contraindications

  • Yeast allergy is the only absolute contraindication for Gardasil 1

Immunocompromised Individuals

  • Can safely receive the vaccine since it contains virus-like particles with no DNA and is not a live/attenuated virus 1, 6
  • No risk of developing viral infection even in immunocompromised states 1
  • However, immune response and efficacy may be reduced 5

Long-Term Safety Evidence

Population-based studies demonstrate no association between HPV vaccination and new-onset chronic conditions or autoimmune diseases. 2

  • Over 200 million doses administered worldwide with favorable safety profile 4
  • Well-conducted population studies show no link to autoimmune diseases despite case reports 2
  • The benefits of cancer prevention far outweigh minimal risks 4
  • Safety profile mirrors that of other routine vaccines 4

Clinical Pitfalls to Avoid

  • Do not pre-emptively administer antipyretics before vaccination as this may reduce immune response 3
  • Do not discontinue the vaccination series due to mild fever or local reactions - these are normal immune responses 3
  • Do not delay vaccination in breastfeeding women - it is safe 5
  • Always observe patients for 15 minutes post-injection to prevent syncope-related injuries 1, 3
  • Report any pregnancy exposures to the vaccine registry at 800-986-8999 5

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Management of Fever After HPV Vaccination

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Vacuna del VPH en Mujeres Embarazadas

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

HPV Vaccine Comparison

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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