Comprehensive Root-Cause and Functional Medicine Protocol for Chronic Migraine
Implement a structured multimodal protocol combining prophylactic pharmacotherapy, behavioral interventions, exercise, dietary modifications, and systematic risk factor management to reduce chronic migraine frequency by ≥50% and decrease reliance on acute and high-cost medications. 1, 2, 3
Initial Assessment and Baseline Establishment
Diagnostic Confirmation and Monitoring Setup
- Confirm chronic migraine diagnosis: ≥15 headache days per month for at least 3 months, with ≥8 days meeting migraine criteria 2, 3
- Implement mandatory headache diary tracking frequency, severity, duration, triggers, and all medication use 4, 1, 2
- Administer Headache Impact Test-6 (HIT-6) and Migraine-Specific Quality-of-Life Questionnaire (MSQ) at baseline and every 3 months to objectively measure treatment response 4, 1
- Specifically ask: "Do you feel like you have a headache of some type on 15 or more days per month?" as patients underreport milder headaches 2, 3
Identify Modifiable Risk Factors
- Screen for medication overuse (present in up to 73% of chronic migraine patients): simple analgesics ≥15 days/month or triptans ≥10 days/month 3
- Assess obesity status (BMI and waist circumference) as obesity drives transformation from episodic to chronic migraine 1, 2, 3
- Evaluate for sleep apnea using STOP-BANG questionnaire; order polysomnography if score ≥3 2, 3
- Screen for psychiatric comorbidities (depression, anxiety) using PHQ-9 and GAD-7 4, 1, 3
- Quantify caffeine intake (total daily mg from all sources) 3
Pharmacological Prophylaxis Protocol
First-Line Prophylactic Selection Algorithm
Start with topiramate as first-line prophylaxis, particularly in patients with obesity, as it provides dual benefit for migraine prevention and weight loss. 1, 2, 3
- Topiramate dosing: Start 25 mg nightly, increase by 25 mg weekly to target dose of 100 mg daily (50 mg twice daily or 100 mg nightly) 1, 2
- Alternative first-line for patients with contraindications to topiramate: Beta-blockers without intrinsic sympathomimetic activity 1
- Propranolol: Start 40 mg twice daily, titrate to 80-120 mg twice daily
- Metoprolol: Start 50 mg twice daily, titrate to 100-200 mg daily
- Avoid in patients with asthma, diabetes, bradycardia, or hypotension 3
Second-Line and Advanced Therapies
OnabotulinumtoxinA (Botox): The only FDA-approved therapy specifically for chronic migraine prophylaxis 2, 5
- Dose: 155 units administered intramuscularly across 31 injection sites in 7 head/neck muscle areas 4, 5
- Frequency: Every 12 weeks 5
- Requires specialist administration using PREEMPT protocol 2
- Contraindications: Skin infection at injection site, allergy to botulinum toxin products, neuromuscular disorders (ALS, myasthenia gravis, Lambert-Eaton syndrome) 5
- Reserve for patients failing ≥2 oral prophylactics or with significant medication intolerance 2
CGRP monoclonal antibodies (erenumab, fremanezumab, galcanezumab): Consider after failure of topiramate and beta-blockers to reduce high-cost medication burden long-term 3
Medication Overuse Management
Abruptly withdraw overused acute medications (except opioids, which require taper) while simultaneously initiating prophylaxis. 3
- Educate that continued overuse perpetuates chronic migraine and prevents prophylaxis from working 3
- Limit acute medication use to <10 days/month for triptans and <15 days/month for simple analgesics going forward 3
Non-Pharmacological Interventions (Essential Components)
Structured Exercise Protocol
Prescribe aerobic exercise 40 minutes, 3 times weekly, which has efficacy equivalent to topiramate or relaxation therapy for migraine prevention. 4, 1, 2
- Modalities: Walking, cycling, swimming, or elliptical at moderate intensity (able to talk but not sing) 6
- Start gradually in deconditioned patients: 10-15 minutes initially, increase by 5 minutes weekly 6
- Monitor adherence via patient diary 6
Behavioral Therapy (Mandatory for All Patients)
Offer cognitive-behavioral therapy (CBT) and biofeedback to all patients as these provide additive benefit to pharmacotherapy and are particularly effective in patients with psychiatric comorbidities. 4, 1, 2
- CBT: 8-12 weekly sessions focusing on pain catastrophizing, stress management, and migraine-specific coping strategies 4, 3
- Biofeedback: Thermal or electromyographic biofeedback, 10-12 sessions 4, 3
- Relaxation techniques: Progressive muscle relaxation, guided visualization, abdominal breathing exercises—practice 20 minutes daily 4, 3
Dietary Modifications
Implement a nutrient-dense, whole food plant-based diet rich in dark green leafy vegetables (LIFE diet approach), which has demonstrated complete migraine reversal in refractory chronic migraine. 7
Core dietary prescription: 7
- Emphasize dark green leafy vegetables (kale, spinach, collards, chard) at every meal—minimum 3-4 cups daily
- Whole grains, legumes, fruits, nuts, and seeds as staples
- Eliminate processed foods, added oils, and animal products
- Monitor serum beta-carotene levels (should triple within 2 months as biomarker of adherence) 7
Trigger elimination: Systematically identify and eliminate individual dietary triggers using elimination-rechallenge protocol 8, 9
Hydration: Ensure adequate daily water intake (minimum 2 liters daily) 1
Weight Management Protocol (If BMI ≥25)
Implement structured weight loss program with goal of 5-10% body weight reduction, as obesity is a modifiable risk factor for chronic migraine. 1, 2, 3
- Combine dietary modifications above with exercise protocol 6
- Consider topiramate as prophylactic agent for dual benefit 1, 2
- Monitor weight monthly 3
Sleep Hygiene Optimization
Enforce consistent sleep-wake schedule (same bedtime/wake time daily, including weekends) and treat identified sleep disorders. 1, 3
- Target 7-9 hours nightly 6
- If sleep apnea diagnosed, initiate CPAP therapy as treatment improves migraine outcomes 2, 3
- Avoid sleep deprivation and excessive sleep (both trigger migraines) 6
Comorbidity Management
Psychiatric Comorbidities
Treat depression and anxiety aggressively as their management directly improves migraine outcomes. 4, 1, 3
- Consider amitriptyline 50-100 mg nightly if both chronic migraine and depression/anxiety present (dual benefit) 2
- Refer to psychiatry for moderate-severe depression (PHQ-9 ≥15) or anxiety (GAD-7 ≥15) 3
Cardiovascular Comorbidities
- Select beta-blockers as prophylaxis in patients with comorbid hypertension or tachycardia 4
- Avoid beta-blockers in patients with asthma, diabetes, or bradycardia 3
Monitoring Parameters and Follow-Up Schedule
Initial Phase (Months 1-3)
- Week 2: Phone check-in for medication tolerability and acute medication use 3
- Month 1: In-person visit to review headache diary, assess medication adherence, reinforce behavioral interventions 3
- Month 3: In-person visit with repeat HIT-6 and MSQ; assess for ≥50% reduction in monthly headache days 1, 3
Maintenance Phase (After Month 3)
- Every 3 months: In-person visits with headache diary review, HIT-6/MSQ administration, weight check, medication reconciliation 3
- Annually: Reassess need for continued prophylaxis; consider trial off medication if migraine-free for 6-12 months 3
Laboratory Monitoring
- Topiramate: Baseline and annual metabolic panel (risk of metabolic acidosis, kidney stones); monitor for cognitive side effects 2
- Beta-blockers: Baseline and periodic heart rate, blood pressure 1
- Dietary intervention: Serum beta-carotene at baseline and 2 months (should triple with LIFE diet adherence) 7
Patient Education and Expectation Setting
Educate patients that chronic migraine is a neurological disorder with biological basis requiring long-term multimodal management, not a psychological condition. 4, 3
- Set realistic expectations: Improvement occurs over months, not days; goal is ≥50% reduction in headache days, not complete elimination initially 4, 3
- Emphasize that chronic migraine management requires patience, treatment adjustments, and periods of relapse/remission 3
- Explain that non-pharmacological interventions (exercise, diet, behavioral therapy) are as important as medications 4, 2
Referral Criteria to Headache Specialist
Refer to headache specialist when: 1, 2, 3
- Failure of ≥2 oral prophylactic medications at therapeutic doses for adequate duration (≥8 weeks each)
- Consideration of OnabotulinumtoxinA or CGRP antibodies
- Diagnostic uncertainty or atypical features
- Complex psychiatric or medical comorbidities complicating management
- Patient request for advanced therapies
Common Pitfalls to Avoid
- Underdosing prophylaxis: Titrate to therapeutic doses (topiramate 100 mg daily, not 25-50 mg) 2
- Inadequate trial duration: Allow ≥8-12 weeks at therapeutic dose before declaring prophylaxis failure 3
- Ignoring medication overuse: Prophylaxis will not work if acute medication overuse continues 3
- Neglecting non-pharmacological interventions: These are not optional adjuncts but essential components with evidence equal to pharmacotherapy 4, 2
- Failing to address obesity and sleep disorders: These perpetuate chronic migraine regardless of medication use 2, 3