What medications should a patient with Crohn's disease and Small Intestine Bacterial Overgrowth (SIBO)-induced reflux, taking famotidine (H2 receptor antagonist) and Xifaxan (rifaximin), avoid taking?

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Drug Interactions and Contraindications with Famotidine and Xifaxan (Rifaximin)

Patients taking famotidine should avoid concomitant use with dasatinib, delavirdine mesylate, cefditoren, fosamprenavir, and tizanidine, while rifaximin has minimal drug interactions due to its non-systemic absorption. 1

Critical Famotidine Drug Interactions

Absolutely Contraindicated Medications

  • Dasatinib (cancer medication) - famotidine significantly reduces absorption due to decreased gastric acidity 1
  • Delavirdine mesylate (HIV medication) - requires acidic environment for absorption 1
  • Cefditoren (antibiotic) - absorption impaired by acid suppression 1
  • Fosamprenavir (HIV protease inhibitor) - concomitant use not recommended 1
  • Tizanidine (muscle relaxant) - famotidine inhibits CYP1A2 metabolism, causing dangerous accumulation leading to hypotension, bradycardia, and excessive drowsiness 1

Medications Requiring Careful Monitoring

Famotidine reduces gastric acidity, which impairs absorption of the following medications that require acidic pH 1:

  • Atazanavir (HIV medication)
  • Erlotinib (cancer medication)
  • Ketoconazole and itraconazole (antifungal medications)
  • Ledipasvir/sofosbuvir (hepatitis C treatment)
  • Nilotinib (cancer medication)
  • Rilpivirine (HIV medication)

For these medications, consult their specific prescribing information for timing adjustments or alternative strategies 1.

Rifaximin (Xifaxan) Drug Interactions

Rifaximin has essentially no clinically significant drug interactions because it is not absorbed systemically from the gastrointestinal tract. 2, 3, 4 This non-systemic absorption is precisely why rifaximin is the preferred antibiotic for SIBO treatment - it minimizes systemic antibiotic resistance risk while maintaining broad-spectrum intestinal coverage 2, 3.

No Documented Interactions

  • Rifaximin demonstrates no clinically relevant interactions with other medications due to negligible systemic absorption 4
  • Safe to use with immunomodulators and biologics commonly prescribed for Crohn's disease 5, 6, 7

Special Considerations for Crohn's Disease and SIBO

Medication Continuation During Treatment

  • Continue all IBD maintenance medications (biologics, immunomodulators, 5-ASA) during rifaximin treatment - do not stop without discussing with the IBD team due to flare risk 8
  • Avoid NSAIDs if possible, as they increase gastrointestinal bleeding risk and may exacerbate Crohn's disease 8

Proton Pump Inhibitor Consideration

  • Gastric acid suppression is a well-established risk factor for SIBO development 9
  • If the patient is taking PPIs (omeprazole, esomeprazole, etc.), consider switching to famotidine as it maintains some protective gastric acidity while providing symptom relief 9
  • However, famotidine itself can predispose to SIBO recurrence if used long-term, so use the lowest effective dose 9

Adjunctive Medications That Are Safe

  • Bile salt sequestrants (cholestyramine, colesevelam) - safe to use if bile salt malabsorption occurs 2, 9
  • Antidiarrheal agents (loperamide) - safe for symptomatic relief 2
  • Vitamin supplementation (B12, fat-soluble vitamins) - recommended during and after SIBO treatment 2, 3

Common Pitfalls to Avoid

  • Do not assume all antibiotics are safe together - while rifaximin has no interactions, famotidine significantly affects absorption of many medications 1
  • Do not stop IBD medications during SIBO treatment without specialist consultation, as disease flare risk outweighs temporary treatment concerns 8
  • Monitor for Clostridioides difficile with prolonged or repeated rifaximin courses, though risk is lower than with systemic antibiotics 2, 9
  • Avoid combining multiple acid suppressants - if using famotidine, do not add PPIs as this increases SIBO recurrence risk 9

References

Guideline

SIBO Treatment and Management

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Guideline

SIBO Management Guidelines

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Research

Review of rifaximin as treatment for SIBO and IBS.

Expert opinion on investigational drugs, 2009

Research

Is rifaximin effective in maintaining remission in Crohn's disease?

Digestive diseases (Basel, Switzerland), 2014

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Tratamiento del Síndrome de Sobrecrecimiento Bacteriano Intestinal (SIBO)

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

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Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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