A patient has painful clustered vesicles on the genitalia and a positive viral laboratory test; which type of virus—single‑stranded RNA, retrovirus, double‑stranded RNA, or double‑stranded DNA—is responsible?

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Genital Herpes is Caused by a Double-Stranded DNA Virus

The virus responsible for painful clustered vesicles on the genitalia is herpes simplex virus (HSV), which is a double-stranded DNA virus, not a single-stranded RNA virus, retrovirus, or double-stranded RNA virus. 1, 2

Viral Classification and Characteristics

  • HSV belongs to the Alphaherpesvirinae subfamily of the Herpesviridae family, which are all double-stranded DNA viruses 3
  • The virus establishes lifelong latent infection in the sacral ganglia, remaining in a non-multiplying episomal form in neuronal nuclei during dormancy 1
  • This DNA-based mechanism allows the virus to integrate into the host nervous system and periodically reactivate, causing recurrent outbreaks 1, 2

Clinical Presentation Confirming HSV Infection

The clinical picture described is pathognomonic for genital herpes:

  • Clustered vesicles containing clear fluid with thousands of infectious viral particles are the hallmark presentation 1
  • These vesicles progress through a characteristic sequence: redness → papules → vesicles → shallow ulcers/erosions → crusting → spontaneous healing without scarring 1
  • The painful nature and clustered distribution on the genitalia strongly indicate HSV-1 or HSV-2 infection 2, 4

Why Other Viral Types Are Incorrect

  • Single-stranded RNA viruses (like enteroviruses causing hand-foot-mouth disease) can cause genital vesicles but are far less common and typically occur in children with characteristic lesions elsewhere 5
  • Retroviruses (like HIV) do not cause vesicular lesions; they integrate into host DNA but manifest differently 1
  • Double-stranded RNA viruses (like rotavirus) cause gastrointestinal disease, not genital vesicular eruptions

Laboratory Confirmation Importance

  • Laboratory confirmation should always be sought because clinical diagnosis alone leads to both false positive and false negative results 1, 6
  • The most sensitive diagnostic method is PCR for HSV DNA from vesicular fluid, though viral culture and antigen detection are also acceptable 6, 4
  • Proper specimen collection involves opening vesicles with a sterile needle and collecting fluid before rupture 1, 7

Common Diagnostic Pitfall

The key pitfall is assuming all genital ulcers are HSV without considering other causes like syphilis (Treponema pallidum), chancroid (Haemophilus ducreyi), or non-infectious etiologies like Behçet syndrome or inflammatory bowel disease 1. However, HSV is the most common cause of sexually acquired genital ulceration 1, and the vesicular presentation with laboratory confirmation makes this diagnosis definitive.

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Genital Herpes: A Review.

American family physician, 2016

Research

Genital Herpes Simplex Virus-An Updated Review.

Advances in pediatrics, 2022

Research

Genital Herpes: Rapid Evidence Review.

American family physician, 2024

Guideline

Differentiating Hand, Foot, and Mouth Disease Rash in the Genital Region from Diaper Rash

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Atypical Herpes Presentations and Diagnostic Challenges

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Differential Diagnoses for Penile Blisters in Newborns

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

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Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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