How can I reduce diarrhea caused by amoxicillin‑clavulanate (Augmentin)?

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Last updated: February 17, 2026View editorial policy

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How to Decrease Diarrhea with Augmentin

Immediate Dosing Strategy

Switch to twice-daily dosing of amoxicillin-clavulanate instead of three-times-daily dosing to reduce gastrointestinal side effects while maintaining therapeutic efficacy. 1

  • The clavulanate component causes dose-dependent gastrointestinal toxicity, so reducing the frequency of clavulanate exposure (by using twice-daily instead of three-times-daily formulations) decreases diarrhea rates without compromising antimicrobial coverage 1
  • Take each dose with a meal or snack, as the FDA label specifically recommends this to reduce gastrointestinal upset 2
  • Limit treatment duration to the minimum effective period for your specific infection 1

When to Continue vs. Discontinue

For mild, non-bloody diarrhea, continue the antibiotic if clinically necessary while monitoring symptoms, as most cases are self-limited. 1, 3

  • Diarrhea occurs in 44-52% of patients on high-dose amoxicillin-clavulanate compared to 14-36% with placebo, so some degree of loose stools is expected and tolerable 1
  • The FDA label confirms that diarrhea is a common problem that usually ends when the antibacterial is discontinued 2

Immediately discontinue amoxicillin-clavulanate and test for C. difficile toxin if you develop:

  • Moderate to severe diarrhea 1, 3
  • Watery and bloody stools 2
  • Stomach cramps with fever 2
  • Diarrhea lasting more than 2-3 days 2

This is critical because 13-27% of children on amoxicillin-clavulanate develop toxigenic C. difficile colonization, with significantly higher rates in those experiencing diarrhea 4

Alternative Antibiotics if Diarrhea is Intolerable

Switch to clindamycin 300 mg twice daily for 10 days if treating tonsillitis or pharyngitis, as it achieves 92.6% clinical cure rates with only 8.6% diarrhea rates. 3

For respiratory infections like sinusitis, consider cefuroxime 375 mg twice daily, which shows similar efficacy but lower gastrointestinal side effects. 1, 3

Avoid azithromycin as a replacement—it provides inadequate coverage for common respiratory pathogens and carries QT prolongation risk. 1, 3

Probiotic Supplementation

Consider adding Enterococcus faecium strain SF68 (FortiFlora) during and after antibiotic therapy, as research shows it reduces total diarrhea scores (P = 0.0058) and prevents the most severe diarrhea (fecal scores of 7 occurred only in the placebo group) 5

Common Pitfalls to Avoid

  • Do not use empiric antibiotics for the diarrhea itself while awaiting C. difficile results, unless you show signs of sepsis 1
  • Do not ignore bloody diarrhea or fever—these warrant immediate discontinuation and C. difficile testing, as the toxin can appear up to 2 months after the last antibiotic dose 2
  • Do not switch to shorter antibiotic courses (3-5 days) as alternatives, since 7-10 day courses are superior for complete symptom resolution 3

Mechanism Explanation

Amoxicillin-clavulanate causes diarrhea through two distinct pathways: direct dose-dependent gastrointestinal toxicity from the clavulanate component itself, and disruption of normal intestinal flora leading to potential C. difficile overgrowth 1, 3. This explains why twice-daily dosing (which reduces clavulanate exposure) is more tolerable than three-times-daily dosing.

References

Guideline

Management of Amoxicillin-Clavulanate-Associated Diarrhea

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Guideline

Alternative Antibiotics for Tonsillitis

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

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Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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