What are the colonoscopic findings in microscopic colitis?

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Last updated: February 20, 2026View editorial policy

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Colonoscopy Findings in Microscopic Colitis

Primary Endoscopic Appearance

The colon appears normal or near-normal on colonoscopic examination in microscopic colitis—this is the defining characteristic that distinguishes it from other forms of colitis and makes histologic diagnosis absolutely essential. 1

  • The colonic mucosa is macroscopically normal or almost normal in appearance during colonoscopy, which is one of the three defining elements of microscopic colitis 1
  • This normal endoscopic appearance occurs in approximately 83.5% of cases 2

Macroscopic Abnormalities (When Present)

When endoscopic abnormalities are visible, they occur in approximately 16.5% of cases and are typically mild and non-specific: 2

  • Mild erythema (redness of the mucosa) 1
  • Mild edema (mucosal swelling) 1
  • Ulceration or linear scarring (more common in collagenous colitis specifically) 2

These findings are subtle and non-diagnostic, unlike the prominent features seen in ulcerative colitis (continuous inflammation with erythema, granularity, friability, ulceration, and spontaneous bleeding) or Crohn's disease (aphthous ulcers, deep serpiginous ulcers, and cobblestone appearance). 1

Critical Diagnostic Pitfall

Do not exclude microscopic colitis based on normal-appearing mucosa—this is the expected finding and biopsies are mandatory for diagnosis regardless of endoscopic appearance. 1

  • The diagnosis of microscopic colitis absolutely requires histologic examination through colonic biopsies, regardless of what the mucosa looks like endoscopically 1
  • Colonoscopy is the preferred modality over flexible sigmoidoscopy because microscopic colitis can have patchy distribution 3

Optimal Biopsy Strategy

To maximize diagnostic yield, specific biopsy locations and numbers are critical:

Biopsy Locations (in order of diagnostic value):

  • Ascending colon: 96.9% diagnostic yield 4
  • Transverse colon: 95.7% diagnostic yield 4
  • Descending colon: 85.0% diagnostic yield 4
  • Rectum: only 82.2% diagnostic yield 4

Recommended Biopsy Protocol:

  • Take biopsies from both right colon (ascending and transverse) and left colon (descending and sigmoid), with a minimum of 2 samples from each segment, placed in separate containers 4
  • A total of 6 biopsies should be taken: 3 from ascending colon and 3 from descending colon 5
  • Biopsies from the rectum alone may give false negative results in 34-43% of cases 3, 4
  • When both right- and left-sided biopsies are taken, 98.2% will show diagnostic features in both locations, but rectal biopsies alone are positive in only 88.7% 2

Special Considerations:

  • If only flexible sigmoidoscopy is performed (not recommended), biopsies must be taken from the descending colon in addition to the rectum and sigmoid colon 4
  • Biopsies should be taken from macroscopically normal mucosa, as normal appearance does not exclude microscopic colitis 4
  • The terminal ileum can occasionally be involved, showing increased intraepithelial lymphocytes and even subepithelial collagen deposition in some patients 3

References

Guideline

Microscopic Colitis Diagnosis and Characteristics

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Diagnostics of Colitis Microscopica

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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