How is celiac disease diagnosed and treated?

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Celiac Disease: Diagnosis and Treatment

Celiac disease is diagnosed through a combination of serologic testing (tissue transglutaminase IgA with total IgA level) while consuming gluten, followed by confirmatory duodenal biopsy showing villous atrophy, and treated exclusively with lifelong strict adherence to a gluten-free diet. 1

Diagnostic Algorithm

Step 1: Initial Serologic Screening (Patient Must Be Consuming Gluten)

  • Order tissue transglutaminase IgA (tTG-IgA) plus total IgA level as the first-line screening test, with sensitivity of 90.7% and specificity of 87.4% in adults at 15 U/mL threshold. 2, 3
  • The total IgA measurement is mandatory because IgA deficiency occurs in 1-3% of celiac patients and causes falsely negative IgA-based antibody tests. 1, 2
  • Patients must consume at least 10g of gluten daily for 6-8 weeks before testing to avoid false-negative results—this is the most common cause of missed diagnoses. 1, 2, 3

Step 2: Confirmatory Serology

  • When tTG-IgA is positive, add endomysial antibody (EMA) testing which has superior specificity of 99.6% in adults. 2, 3
  • If tTG-IgA exceeds 10 times the upper limit of normal AND EMA is positive in a repeat sample, the positive predictive value approaches 100%. 2, 3

Step 3: Special Populations—IgA Deficiency

  • If total IgA is low or absent, switch to IgG-based testing using IgG deamidated gliadin peptide (DGP-IgG), which demonstrates 93.6% sensitivity and 99.4% specificity in adults. 2, 3
  • IgG tTG has poor performance (sensitivity 40.6-84.6%) and should not be used as a primary screen when total IgA is normal. 3

Step 4: Duodenal Biopsy (Gold Standard)

  • Proceed to upper endoscopy with at least 6 duodenal biopsy specimens from the second part of the duodenum or beyond, as mucosal changes can be patchy. 1, 3
  • Visual endoscopic appearance alone is insufficient—endoscopists should not regard the absence of visual features as sufficient to rule out celiac disease. 1
  • Diagnostic histology requires villous atrophy (partial to total) with crypt hyperplasia and increased intraepithelial lymphocytes (≥25 IELs per 100 enterocytes). 3
  • Specimens must be properly oriented and evaluated using Marsh classification by an experienced pathologist. 3

Step 5: HLA Testing (Selective Use Only)

  • HLA-DQ2/DQ8 testing should NOT be used as a primary diagnostic tool—it is reserved for exclusionary purposes when diagnosis is unclear. 1
  • Approximately 95% of celiac patients have HLA-DQ2 and 5% have HLA-DQ8; absence of both alleles provides nearly 100% negative predictive value (essentially excludes celiac disease). 1, 2
  • Use HLA testing only when: serology and biopsy are equivocal, the patient is already on a gluten-free diet, or for family screening with genetic counseling available. 1, 3

Critical Diagnostic Pitfalls to Avoid

  • Never initiate a gluten-free diet before completing the full diagnostic workup—this invalidates both serologic and histologic testing and is the most common diagnostic error. 1, 2, 3
  • Do not diagnose celiac disease based on serology alone without biopsy confirmation in adults. 3, 4
  • Do not rely on isolated positive TTG IgG when total IgA is normal—this generates frequent false-positives and has no diagnostic value. 3
  • Avoid ordering multiple antibody panels simultaneously in low-risk individuals, as this reduces specificity without meaningful sensitivity gains. 3

High-Risk Populations Requiring Screening

  • First-degree relatives of celiac patients (10% prevalence). 2
  • Type 1 diabetes (5-10% prevalence). 2
  • Autoimmune thyroid disease or autoimmune liver disease. 2, 3
  • Unexplained iron-deficiency anemia (celiac disease present in 2-6% of cases). 2, 3
  • Down syndrome or Turner syndrome. 3

Treatment: Strict Lifelong Gluten-Free Diet

The only proven treatment for celiac disease is lifelong adherence to a strict gluten-free diet (daily gluten intake <10 mg). 1, 3

Essential Treatment Components

  • Immediate referral to an experienced registered dietitian for comprehensive dietary education—this is mandatory, not optional. 1, 2
  • Referral to a celiac disease support group to improve long-term adherence. 1
  • Treatment of nutritional deficiencies (iron, folate, vitamin B12) is essential at diagnosis. 1
  • Bone mineral density assessment to screen for osteoporosis, which occurs in 1.7-42% of untreated patients. 2

Expected Benefits of Gluten-Free Diet

  • Compliance with a gluten-free diet is protective against non-Hodgkin's lymphoma in celiac disease and dermatitis herpetiformis. 1
  • Fracture risk normalizes after the first year on a gluten-free diet, even though bone mineral density may remain persistently low. 2
  • Improvements in bone mineral density are greatest in the first years of treatment. 1
  • Treatment for at least 12 months results in increased body weight, body mass index, fat mass, bone mass, and improved nutritional parameters. 1

Follow-Up and Monitoring

  • Evaluate patients at regular intervals with a physician and dietitian to assess compliance by history and reinforce adherence. 1
  • Monitor adherence with tTG-IgA or EMA serology at 6 months, 12 months, then annually—these tests are sensitive for major dietary indiscretions but not minor transient ones. 1, 3
  • In children, histologic improvement occurs quickly; in adults, the small intestinal mucosa heals more slowly and less completely. 1
  • A negative serologic test in adults does not necessarily mean improvement beyond severe villous atrophy. 1
  • Persistently positive serology indicates ongoing intestinal damage and gluten exposure. 2, 3

Non-Responsive Celiac Disease

When symptoms persist despite a gluten-free diet and negative serology, evaluate for:

  • Review the original diagnosis to exclude alternative diagnoses. 4
  • Review the gluten-free diet to ensure no obvious gluten contamination—inadvertent exposure is the most common cause. 4
  • Associated disorders: microscopic colitis, pancreatic exocrine dysfunction. 4
  • Complications: enteropathy-associated lymphoma or refractory celiac disease. 4, 5
  • Consider follow-up biopsy in 1-3 years to confirm mucosal healing, especially in patients with severe initial presentation. 3

Extraintestinal Manifestations

Celiac disease should be considered in patients presenting with:

  • Iron deficiency anemia (48% of adults at presentation), often resistant to oral iron supplementation. 2
  • Osteopenia/osteoporosis with increased fracture risk (60-100% higher than general population before diagnosis). 2
  • Depression and psychiatric disorders (24% of adults). 2
  • Dermatitis herpetiformis (pathognomonic skin manifestation with granular IgA deposits on direct immunofluorescence). 2
  • Infertility, recurrent miscarriages, and adverse pregnancy outcomes. 2
  • Elevated liver enzymes. 2, 4
  • Epilepsy and seizures. 2

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Extraintestinal Manifestations of Celiac Disease

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Guideline

Evaluating Discordant Celiac Disease Test Results

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Research

ACG clinical guidelines: diagnosis and management of celiac disease.

The American journal of gastroenterology, 2013

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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